Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005541`

染色体: Chr02 坐标: 75423926-75428294 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005541`
名称	SmilChr02G005541
描述	WD repeat-containing protein 26 homolog
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75423926 - 75428294 / `+`

ID 对照

NCBI Gene ID	`LOC131009500`
GeneID	`131009500`
locus_tag	`-`
NCBI Name	`LOC131009500`
原始查询	`SmilChr02G005541`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WD repeat-containing protein 26 homolog
产物	WD repeat-containing protein 26 homolog
Arabidopsis	`AT5G08560` (AT5G08560) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:830756] identity=56.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0294600` (OsWD40-41) - identity=55.6; qcov=0.883; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40); PF23627 (LisH_WDR26)
InterPro	-
eggNOG	-
NR	GeneID:131009500

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057792850.1`
2	Cytosol	细胞质基质	0.60000	`XP_057792850.1`
3	Cytoplasm	细胞质	0.40000	`XP_057792850.1`
4	Chromosome	染色体	0.00000	`XP_057792850.1`
5	Centromere	着丝粒	0.00000	`XP_057792850.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75427124`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr2:75427133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B136,B20,C31,C44,C55
`Chr2:75427164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr2:75427289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr2:75427310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:75427487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B28,B78,C33,D7
`Chr2:75427497`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr2:75427970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C85,D2,D9
`Chr2:75428129`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr2:75428135`	`AGG`	`A`	2bp_deletion	frameshift_variant	159	A1,A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A24,A25,A4,A5,A8,A9,B1,B100,B102,B103,B109,B110,B112,B113,B114,B117,B118,B12,B121,B122,B124,B127,B128,B129,B130,B131,B136,B137,B14,B15,B17,B18,B19,B21,B22,B23,B26,B27,B29,B3,B31,B32,B35,B36,B4,B40,B42,B43,B45,B46,B47,B48,B49,B5,B51,B52,B53,B54,B56,B57,B58,B59,B6,B64,B66,B7,B70,B71,B72,B73,B74,B75,B77,B8,B80,B81,B83,B86,B88,B9,B90,B91,B92,B93,B95,B96,B97,C1,C12,C14,C16,C17,C18,C19,C20,C21,C22,C25,C27,C28,C29,C30,C31,C37,C4,C40,C41,C42,C44,C45,C47,C48,C51,C53,C54,C55,C56,C57,C59,C61,C62,C63,C64,C65,C66,C7,C70,C71,C72,C73,C75,C78,C79,C80,C81,C82,C83,C87,D1,D10,D3,D4,D5,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792850.1

579 aa

290

579

LisH_WDR26

WD40

PF23627 LisH_WDR26 52-94 aa PF00400 WD40 262-297 aa PF00400 WD40 307-343 aa PF00400 WD40 347-385 aa PF00400 WD40 474-512 aa PF00400 WD40 517-555 aa

XP_057792851.1

579 aa

290

579

LisH_WDR26

WD40

PF23627 LisH_WDR26 52-94 aa PF00400 WD40 262-297 aa PF00400 WD40 307-343 aa PF00400 WD40 347-385 aa PF00400 WD40 474-512 aa PF00400 WD40 517-555 aa

XP_057792852.1

579 aa

290

579

LisH_WDR26

WD40

PF23627 LisH_WDR26 52-94 aa PF00400 WD40 262-297 aa PF00400 WD40 307-343 aa PF00400 WD40 347-385 aa PF00400 WD40 474-512 aa PF00400 WD40 517-555 aa

XP_057792853.1

579 aa

290

579

LisH_WDR26

WD40

PF23627 LisH_WDR26 52-94 aa PF00400 WD40 262-297 aa PF00400 WD40 307-343 aa PF00400 WD40 347-385 aa PF00400 WD40 474-512 aa PF00400 WD40 517-555 aa

XP_057792854.1

579 aa

290

579

LisH_WDR26

WD40

PF23627 LisH_WDR26 52-94 aa PF00400 WD40 262-297 aa PF00400 WD40 307-343 aa PF00400 WD40 347-385 aa PF00400 WD40 474-512 aa PF00400 WD40 517-555 aa

XP_057792855.1

579 aa

290

579

LisH_WDR26

WD40

PF23627 LisH_WDR26 52-94 aa PF00400 WD40 262-297 aa PF00400 WD40 307-343 aa PF00400 WD40 347-385 aa PF00400 WD40 474-512 aa PF00400 WD40 517-555 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792850.1`	Pfam	`PF23627`	LisH_WDR26	Domain	52	94	1.2e-20	73.3	WDR26 Lis-homology domain
`XP_057792850.1`	Pfam	`PF00400`	WD40	Repeat	262	297	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792850.1`	Pfam	`PF00400`	WD40	Repeat	307	343	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792850.1`	Pfam	`PF00400`	WD40	Repeat	347	385	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792850.1`	Pfam	`PF00400`	WD40	Repeat	474	512	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792850.1`	Pfam	`PF00400`	WD40	Repeat	517	555	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792851.1`	Pfam	`PF23627`	LisH_WDR26	Domain	52	94	1.2e-20	73.3	WDR26 Lis-homology domain
`XP_057792851.1`	Pfam	`PF00400`	WD40	Repeat	262	297	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792851.1`	Pfam	`PF00400`	WD40	Repeat	307	343	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792851.1`	Pfam	`PF00400`	WD40	Repeat	347	385	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792851.1`	Pfam	`PF00400`	WD40	Repeat	474	512	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792851.1`	Pfam	`PF00400`	WD40	Repeat	517	555	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792852.1`	Pfam	`PF23627`	LisH_WDR26	Domain	52	94	1.2e-20	73.3	WDR26 Lis-homology domain
`XP_057792852.1`	Pfam	`PF00400`	WD40	Repeat	262	297	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792852.1`	Pfam	`PF00400`	WD40	Repeat	307	343	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792852.1`	Pfam	`PF00400`	WD40	Repeat	347	385	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792852.1`	Pfam	`PF00400`	WD40	Repeat	474	512	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792852.1`	Pfam	`PF00400`	WD40	Repeat	517	555	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792853.1`	Pfam	`PF23627`	LisH_WDR26	Domain	52	94	1.2e-20	73.3	WDR26 Lis-homology domain
`XP_057792853.1`	Pfam	`PF00400`	WD40	Repeat	262	297	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792853.1`	Pfam	`PF00400`	WD40	Repeat	307	343	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792853.1`	Pfam	`PF00400`	WD40	Repeat	347	385	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792853.1`	Pfam	`PF00400`	WD40	Repeat	474	512	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792853.1`	Pfam	`PF00400`	WD40	Repeat	517	555	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792854.1`	Pfam	`PF23627`	LisH_WDR26	Domain	52	94	1.2e-20	73.3	WDR26 Lis-homology domain
`XP_057792854.1`	Pfam	`PF00400`	WD40	Repeat	262	297	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792854.1`	Pfam	`PF00400`	WD40	Repeat	307	343	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792854.1`	Pfam	`PF00400`	WD40	Repeat	347	385	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792854.1`	Pfam	`PF00400`	WD40	Repeat	474	512	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792854.1`	Pfam	`PF00400`	WD40	Repeat	517	555	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792855.1`	Pfam	`PF23627`	LisH_WDR26	Domain	52	94	1.2e-20	73.3	WDR26 Lis-homology domain
`XP_057792855.1`	Pfam	`PF00400`	WD40	Repeat	262	297	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792855.1`	Pfam	`PF00400`	WD40	Repeat	307	343	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792855.1`	Pfam	`PF00400`	WD40	Repeat	347	385	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792855.1`	Pfam	`PF00400`	WD40	Repeat	474	512	8.2e-43	143.7	WD domain, G-beta repeat
`XP_057792855.1`	Pfam	`PF00400`	WD40	Repeat	517	555	8.2e-43	143.7	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057936870.1
AGAACACACACACACAACCAACAAAGCCTTTGAGTGCTTCTCACTCTTTCCTTTTCAAAGAAATCACACATCCAAACAGAGACTAAAGTATTATCCTCCCTGCACACAAAACCACCCATATAAGTACCCATTTCCAACCTGGATCCCCTTGTCCAAATCCACTTCGCTCCCAATCCCTAAACGGGTCGGTTCCATTTCTCTTCATCGCGCGATAATCGCTGCCCCCTTTGATTACCCGTGAGTCGGTGACTTGTGTTTGA...

XM_057936872.1
AGAACACACACACACAACCAACAAAGCCTTTGAGTGCTTCTCACTCTTTCCTTTTCAAAGAAATCACACATCCAAACAGAGACTAAAGTATTATCCTCCCTGCACACAAAACCACCCATATAAGTACCCATTTCCAACCTGGATCCCCTTGTCCAAATCCACTTCGCTCCCAATCCCTAAACGGGTCGGTTCCATTTCTCTTCATCGCGCGATAATCGCTGCCCCCTTTGATTACCCGTGACTTGTGTTTGATTATTTTT...

CDS

6 records

下载 CDS FASTA

LOC131009500
ATGGGAGGTGTAGAGGATGATGAACCACCATCGAAGCGTGTGAAGGTGACCTCTGTAGATTCAGGGGGTATTTCAAACAGTTTATACCTTAGACAGAGAGGTTGCTCATTTAGTGACTCAATGGCTCGGCTTTTGGCAATTGAGGGGGATGATGAGGTTGTTGGTTCAAAAGGTGTCATAAAGAAAGTCGAGCTTGTTCGTGTTATAGCCGAGGCATTGTATTCACTTGGCTATTCAAAGTCAGGGGCATGCCTAGAGGA...

Protein

6 records

下载 Protein FASTA

XP_057792850.1
MGGVEDDEPPSKRVKVTSVDSGGISNSLYLRQRGCSFSDSMARLLAIEGDDEVVGSKGVIKKVELVRVIAEALYSLGYSKSGACLEEESGIPFHAPEIDLFMRHILEGQWDDSVSVLHKFGVIDETLTKLASLVIFEQKFFELLDDGKIMDALKTLRTEITPLCINYERVRELSSFVLSPSQNLLDGTSSKGSKLESRKKLLDKLRKLLPPTVIVPEKRLVHLVEQALVLQKDACKFHNSSVGKMSLLADHQCGRDHIPT...

XP_057792851.1
MGGVEDDEPPSKRVKVTSVDSGGISNSLYLRQRGCSFSDSMARLLAIEGDDEVVGSKGVIKKVELVRVIAEALYSLGYSKSGACLEEESGIPFHAPEIDLFMRHILEGQWDDSVSVLHKFGVIDETLTKLASLVIFEQKFFELLDDGKIMDALKTLRTEITPLCINYERVRELSSFVLSPSQNLLDGTSSKGSKLESRKKLLDKLRKLLPPTVIVPEKRLVHLVEQALVLQKDACKFHNSSVGKMSLLADHQCGRDHIPT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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