Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005548`

染色体: Chr02 坐标: 75464057-75468855 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005548`
名称	SmilChr02G005548
描述	uncharacterized SmilChr02G005548
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75464057 - 75468855 / `+`

ID 对照

NCBI Gene ID	`LOC131009509`
GeneID	`131009509`
locus_tag	`-`
NCBI Name	`LOC131009509`
原始查询	`SmilChr02G005548`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	centromere protein O [Source:NCBI gene (formerly Entrezgene);Acc:830936]; symbol=AT5G10710; hit=AT5G10710; species=arabidopsis; confidence=high
产物	centromere protein O [Source:NCBI gene (formerly Entrezgene);Acc:830936]; symbol=AT5G10710; hit=AT5G10710; species=arabidopsis; confidence=high
Arabidopsis	`AT5G10710` (AT5G10710) centromere protein O [Source:NCBI gene (formerly Entrezgene);Acc:830936] identity=70.3; qcov=0.939; evalue=8.73e-117; confidence=high
Rice	`Os04g0284100` - identity=68.3; qcov=0.32; evalue=8.07e-32; confidence=low
GO	GO:0000776 (kinetochore); GO:0031511 (Mis6-Sim4 complex); GO:0034508 (GO:0034508)
KEGG	-
Pfam	PF09496 (CENP-O)
InterPro	-
eggNOG	-
NR	GeneID:131009509

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792872.1`
2	Chromosome	染色体	1.00000	`XP_057792872.1`
3	Nucleoplasm	核质	1.00000	`XP_057792872.1`
4	Nuclear body	核内小体	0.80000	`XP_057792873.1`
5	Centromere	着丝粒	0.40000	`XP_057792873.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75466319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,A2,B101
`Chr2:75466343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B133,B17,B53,C77
`Chr2:75467404`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:75467571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B13,B140,B46
`Chr2:75467606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr2:75467992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C45,C58,D6
`Chr2:75468040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B134,B28,B62,B76
`Chr2:75468220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr2:75468226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B81
`Chr2:75468231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B98,D5
`Chr2:75468242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B2,B24,B57,B93
`Chr2:75468254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B16,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792872.1

354 aa

177

354

CENP-O

PF09496 CENP-O 135-280 aa

XP_057792873.1

344 aa

172

344

CENP-O

PF09496 CENP-O 135-327 aa

XP_057792874.1

309 aa

154

309

CENP-O

PF09496 CENP-O 101-292 aa

XP_057792875.1

247 aa

124

247

CENP-O

PF09496 CENP-O 135-245 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792872.1`	Pfam	`PF09496`	CENP-O	Family	135	280	1.3e-24	88.1	Cenp-O kinetochore centromere component
`XP_057792873.1`	Pfam	`PF09496`	CENP-O	Family	135	327	2.2e-25	90.6	Cenp-O kinetochore centromere component
`XP_057792874.1`	Pfam	`PF09496`	CENP-O	Family	101	292	3.5e-25	90.0	Cenp-O kinetochore centromere component
`XP_057792875.1`	Pfam	`PF09496`	CENP-O	Family	135	245	5.8e-22	79.5	Cenp-O kinetochore centromere component

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057936889.1
ATCAATCAAATATAGATTTGGAGGAGGAGATTGGGGAATCCAATTCAAACCCCAATTCCCCAATTTCATTAAATTAGGGTTTTCACCATTGGAGAATGGAGGCAACTCCTCATTCCTGATAGCTAGCTGAATTGGAGTGAAATGCAGCAACTTGATCTAGTGAAGGAGAAGCCTGTTTCTCTGAATATGGGAGAAGTGAACTTTTCCCAAGCTGAGGATGTAAGGTTGGAGACTACACGGGCAAGATTTTCAAGTCTTCT...

XM_057936890.1
ATCAATCAAATATAGATTTGGAGGAGGAGATTGGGGAATCCAATTCAAACCCCAATTCCCCAATTTCATTAAATTAGGGTTTTCACCATTGGAGAATGGAGGCAACTCCTCATTCCTGATAGCTAGCTGAATTGGAGTGAAATGCAGCAACTTGATCTAGTGAAGGAGAAGCCTGTTTCTCTGAATATGGGAGAAGTGAACTTTTCCCAAGCTGAGGATGTAAGGTTGGAGACTACACGGGCAAGATTTTCAAGTCTTCT...

CDS

4 records

下载 CDS FASTA

LOC131009509
ATGCAGCAACTTGATCTAGTGAAGGAGAAGCCTGTTTCTCTGAATATGGGAGAAGTGAACTTTTCCCAAGCTGAGGATGTAAGGTTGGAGACTACACGGGCAAGATTTTCAAGTCTTCTTAAGAGGCATGCAGAATTAACAGAGCGGCTTTCTAGGGATTCTGACAAATCTGTATTTGAACGTTTGCAAAGAGAATTTGAAGCTGCACATGCTTCTCAAACTCAAGAAATATGTTTGGATGGTGAGCAATGGAATGATGG...

Protein

4 records

下载 Protein FASTA

XP_057792872.1
MQQLDLVKEKPVSLNMGEVNFSQAEDVRLETTRARFSSLLKRHAELTERLSRDSDKSVFERLQREFEAAHASQTQEICLDGEQWNDGLLATIRERVHMEAERKAMLLQGDAAAMPNLPFHEKITYRVGNKMICCLDGPRIGIQYETSFAGEPCELFHCVLESKSFLEKMTVLEHTIPFFLPIRDAENDYLSSNAMKFIDYVGDLLQAYVDRREQVRLIKELYGNQIGELYCSLPYHMIEFVLADFDCKVIVSIRYGELVS...

XP_057792873.1
MQQLDLVKEKPVSLNMGEVNFSQAEDVRLETTRARFSSLLKRHAELTERLSRDSDKSVFERLQREFEAAHASQTQEICLDGEQWNDGLLATIRERVHMEAERKAMLLQGDAAAMPNLPFHEKITYRVGNKMICCLDGPRIGIQYETSFAGEPCELFHCVLESKSFLEKMTVLEHTIPFFLPIRDAENDYLSSNAMKFIDYVGDLLQAYVDRREQVRLIKELYGNQIGELYCSLPYHMIEFVLADFDCKVIVSIRYGELVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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