Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005549`

染色体: Chr02 坐标: 75470795-75474969 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005549`
名称	SmilChr02G005549
描述	uncharacterized SmilChr02G005549
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75470795 - 75474969 / `-`

ID 对照

NCBI Gene ID	`LOC131009510`
GeneID	`131009510`
locus_tag	`-`
NCBI Name	`LOC131009510`
原始查询	`SmilChr02G005549`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Pleckstrin homology (PH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817638]; symbol=SWAP70; hit=AT2G30880; species=arabidopsis; confidence=high
产物	Pleckstrin homology (PH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817638]; symbol=SWAP70; hit=AT2G30880; species=arabidopsis; confidence=high
Arabidopsis	`AT2G30880` (SWAP70) Pleckstrin homology (PH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817638] identity=67.9; qcov=1.04; evalue=0; confidence=high
Rice	`Os03g0666200` (OsSWAP70A) - identity=64.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0001881 (receptor recycling); GO:0005769 (early endosome); GO:0005802 (trans-Golgi network); GO:0007032 (endosome organization); GO:0042147 (retrograde transport, endosome to Golgi); GO:0055037 (recycling endosome)
KEGG	-
Pfam	PF00169 (PH)
InterPro	-
eggNOG	-
NR	GeneID:131009510

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057792876.1`
2	Cell membrane	细胞膜	0.80000	`XP_057792876.1`
3	Cytoplasm	细胞质	0.20000	`XP_057792876.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057792876.1`
5	Clathrin-coated vesicle	Clathrin-coated vesicle	0.20000	`XP_057792876.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75471098`	`C`	`CT`	1bp_insertion	frameshift_variant	3	A1,B4,C37
`Chr2:75471098`	`C`	`CT`	1bp_insertion	CDS_variant	3	A1,B4,C37
`Chr2:75471126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B18,B30,B31,B97,C26
`Chr2:75471133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B33,B98,C86,D5
`Chr2:75471134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B73,C13,C20,C34,C60
`Chr2:75471161`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:75471193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr2:75471282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B133,C77
`Chr2:75471302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr2:75471358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr2:75471873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:75471875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792876.1

489 aa

244

489

PF00169 PH 33-131 aa

XP_057792877.1

489 aa

244

489

PF00169 PH 33-131 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792876.1`	Pfam	`PF00169`	PH	Domain	33	131	1.8e-06	29.1	PH domain
`XP_057792877.1`	Pfam	`PF00169`	PH	Domain	33	131	1.8e-06	29.1	PH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936894.1
GGAAATTCAACACACATTAGTCCAAGAAAGGGAACAAACGAACCACCCCCAACTGCAGATCATCACCGAAAACCCTCACTAAATTCACGCACAAAATTCCGTCGATTCCCACCCCAAAATTCTCATCAAAATCGCCATGGCATCAAATGGAGCTCCACTCGGGGATGCTGATACGCAGACGAGCTTGGAGAAGATCAAAAGGCAGCTCGCCTCGAGCTCCGGCCGACAACTTCTTCAAGGGCCCCTCTTAAAGCGATCCG...

XM_057936893.1
GGAAATTCAACACACATTAGTCCAAGAAAGGGAACAAACGAACCACCCCCAACTGCAGATCATCACCGAAAACCCTCACTAAATTCACGCACAAAATTCCGTCGATTCCCACCCCAAAATTCTCATCAAAATCGCCATGGCATCAAATGGAGCTCCACTCGGGGATGCTGATACGCAGACGAGCTTGGAGAAGATCAAAAGGCAGCTCGCCTCGAGCTCCGGCCGACAACTTCTTCAAGGGCCCCTCTTAAAGCGATCCG...

CDS

2 records

下载 CDS FASTA

LOC131009510
ATGGCATCAAATGGAGCTCCACTCGGGGATGCTGATACGCAGACGAGCTTGGAGAAGATCAAAAGGCAGCTCGCCTCGAGCTCCGGCCGACAACTTCTTCAAGGGCCCCTCTTAAAGCGATCCGAAACGTTAAGGAAGTGGAACGAGAGGTGGGTGATTTTAGACCCAACAACTGGGAAGATGGAATACAAGGTCAGGAGGAACGAGCCGGCAGTAAAAGGAACCATAGTGTTTGACGCAAACAGCACCATCACAATTTC...

Protein

2 records

下载 Protein FASTA

XP_057792876.1
MASNGAPLGDADTQTSLEKIKRQLASSSGRQLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKVRRNEPAVKGTIVFDANSTITISPVNFQGLPKYDGCCFYIGTPQKKDYFLCAETPAATRAWVSTLHATQLVLKAHKEAVNTLSGNGSSKLGTVATVVAAANSTALEASKEIEAAMQVAMRNALGAMMNKTPDLPMDDLSIMKETLRVKDEELQNLARDLRARDSTIKELAEKLSETAEAAEAAASAAYTMDEQRRI...

XP_057792877.1
MASNGAPLGDADTQTSLEKIKRQLASSSGRQLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKVRRNEPAVKGTIVFDANSTITISPVNFQGLPKYDGCCFYIGTPQKKDYFLCAETPAATRAWVSTLHATQLVLKAHKEAVNTLSGNGSSKLGTVATVVAAANSTALEASKEIEAAMQVAMRNALGAMMNKTPDLPMDDLSIMKETLRVKDEELQNLARDLRARDSTIKELAEKLSETAEAAEAAASAAYTMDEQRRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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