当前解析结果
SmilChr02G005553| 统一新 Gene ID | SmilChr02G005553 |
|---|---|
| 名称 | SmilChr02G005553 |
| 描述 | probable E3 ubiquitin-protein ligase XERICO |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75501085 - 75503354 / - |
| NCBI Gene ID | LOC131009515 |
|---|---|
| GeneID | 131009515 |
| locus_tag | - |
| NCBI Name | LOC131009515 |
| 原始查询 | SmilChr02G005553 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase XERICO |
| 产物 | probable E3 ubiquitin-protein ligase XERICO |
| Arabidopsis | AT2G04240 (XERICO)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814962] identity=45.7; qcov=1.06; evalue=1.33e-39; confidence=medium |
| Rice | Os08g0492500 (OsRHP1)- identity=35.7; qcov=1.03; evalue=2.28e-28; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009515 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.40000 | XP_057792885.1 |
| 2 | Endosome | 内体 | 0.40000 | XP_057792886.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057792885.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057792885.1 |
| 5 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057792885.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75501317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B66,B74,C29,C70,C72 |
Chr2:75501318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr2:75501329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B56,B96,D7 |
Chr2:75501366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B33,C80,D10,D6 |
Chr2:75501426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C45,C58 |
Chr2:75501535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B88,C73 |
Chr2:75501588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,C42 |
Chr2:75501757 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | B10 |
Chr2:75501757 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | B10 |
Chr2:75501764 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B1,B101,C70,C8 |
Chr2:75501764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B101,C70,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792885.1PF12678
zf-rbx1 98-143 aa
PF13639
zf-RING_2 99-143 aa
PF17123
zf-RING_11 100-128 aa
PF13923
zf-C3HC4_2 100-142 aa
PF14634
zf-RING_5 100-143 aa
PF13445
zf-RING_UBOX 101-140 aa
PF00097
zf-C3HC4 101-142 aa
XP_057792886.1PF12678
zf-rbx1 92-136 aa
PF13639
zf-RING_2 92-136 aa
PF17123
zf-RING_11 93-121 aa
PF13923
zf-C3HC4_2 93-135 aa
PF14634
zf-RING_5 93-136 aa
PF13445
zf-RING_UBOX 94-133 aa
PF00097
zf-C3HC4 94-135 aa
XP_057792887.1PF12678
zf-rbx1 92-136 aa
PF13639
zf-RING_2 92-136 aa
PF17123
zf-RING_11 93-121 aa
PF13923
zf-C3HC4_2 93-135 aa
PF14634
zf-RING_5 93-136 aa
PF13445
zf-RING_UBOX 94-133 aa
PF00097
zf-C3HC4 94-135 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792885.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 98 | 143 | 1.7e-07 | 32.0 | RING-H2 zinc finger domain |
XP_057792885.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 99 | 143 | 6.2e-14 | 52.7 | Ring finger domain |
XP_057792885.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 100 | 128 | 4.3e-10 | 39.8 | RING-like zinc finger |
XP_057792885.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 100 | 142 | 6.2e-08 | 33.0 | Zinc finger, C3HC4 type (RING finger) |
XP_057792885.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 100 | 143 | 1.7e-07 | 31.8 | zinc-RING finger domain |
XP_057792885.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 101 | 140 | 6.8e-08 | 33.1 | RING-type zinc-finger |
XP_057792885.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 101 | 142 | 3.3e-09 | 37.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057792886.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 92 | 136 | 1.8e-07 | 32.0 | RING-H2 zinc finger domain |
XP_057792886.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 92 | 136 | 5.6e-14 | 52.8 | Ring finger domain |
XP_057792886.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 93 | 121 | 4e-10 | 39.9 | RING-like zinc finger |
XP_057792886.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 93 | 135 | 5.7e-08 | 33.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057792886.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 93 | 136 | 1.6e-07 | 31.9 | zinc-RING finger domain |
XP_057792886.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 94 | 133 | 7e-08 | 33.1 | RING-type zinc-finger |
XP_057792886.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 94 | 135 | 3e-09 | 37.3 | Zinc finger, C3HC4 type (RING finger) |
XP_057792887.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 92 | 136 | 1.8e-07 | 32.0 | RING-H2 zinc finger domain |
XP_057792887.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 92 | 136 | 5.6e-14 | 52.8 | Ring finger domain |
XP_057792887.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 93 | 121 | 4e-10 | 39.9 | RING-like zinc finger |
XP_057792887.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 93 | 135 | 5.7e-08 | 33.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057792887.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 93 | 136 | 1.6e-07 | 31.9 | zinc-RING finger domain |
XP_057792887.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 94 | 133 | 7e-08 | 33.1 | RING-type zinc-finger |
XP_057792887.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 94 | 135 | 3e-09 | 37.3 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。