Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005557`

染色体: Chr02 坐标: 75525210-75533646 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005557`
名称	SmilChr02G005557
描述	uncharacterized SmilChr02G005557
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75525210 - 75533646 / `-`

ID 对照

NCBI Gene ID	`LOC131009519`
GeneID	`131009519`
locus_tag	`-`
NCBI Name	`LOC131009519`
原始查询	`SmilChr02G005557`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:814961]; symbol=AT2G04235; hit=AT2G04235; species=arabidopsis; confidence=weak
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:814961]; symbol=AT2G04235; hit=AT2G04235; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G04235` (AT2G04235) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:814961] identity=45.8; qcov=0.283; evalue=1.99e-57; confidence=weak
Rice	`Os06g0608100` - identity=33.9; qcov=0.279; evalue=2.93e-23; confidence=weak
GO	-
KEGG	-
Pfam	PF18210 (Knl1_RWD_C)
InterPro	-
eggNOG	-
NR	GeneID:131009519

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792893.1`
2	Chromosome	染色体	1.00000	`XP_057792893.1`
3	Centromere	着丝粒	0.80000	`XP_057792893.1`
4	Spindle	Spindle	0.60000	`XP_057792895.1`
5	Nucleus membrane	核膜	0.40000	`XP_057792895.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75525629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,D11
`Chr2:75525655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr2:75526193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr2:75526217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,B73
`Chr2:75526382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:75526383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr2:75526970`	`TA`	`T`	1bp_deletion	frameshift_variant	11	A15,B130,B15,B55,B63,B83,C38,C56,C61,C67,D7
`Chr2:75527248`	`CCT`	`C`	2bp_deletion	frameshift_variant	2	B140,B46
`Chr2:75527277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:75527648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:75527738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B105,B12,B7,B94
`Chr2:75527770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792893.1

1267 aa

634

1267

Knl1_RWD_C

PF18210 Knl1_RWD_C 1001-1153 aa

XP_057792894.1

1226 aa

613

1226

Knl1_RWD_C

PF18210 Knl1_RWD_C 960-1112 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792893.1`	Pfam	`PF18210`	Knl1_RWD_C	Domain	1001	1153	1.2e-11	45.7	Knl1 RWD C-terminal domain
`XP_057792894.1`	Pfam	`PF18210`	Knl1_RWD_C	Domain	960	1112	1.1e-11	45.8	Knl1 RWD C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057936911.1
CGCATCCTTTTCCCTCCAAAATTGGAAAATGCAAAAACCCTAGCTCCAATTGGTGGAAAAATCCCCCAAAATTTTAAAAAATTCAGAGTTTTTTTTTTTTCATGGATCCTAAGGAGGAACCCAACGCCGACGGGGACCGCCGCGACATGGCGGCCGAAAATTCTGACACGGTGGCTGTGAACAAGAAGCGGGCTCGCAGGGTGAGCTTTGCTGAGATGACATCTATTCACTTCTTCGACCGCGATGAGGAGTTCAATGAG...

XM_057936910.1
CGCATCCTTTTCCCTCCAAAATTGGAAAATGCAAAAACCCTAGCTCCAATTGGTGGAAAAATCCCCCAAAATTTTAAAAAATTCAGAGTTTTTTTTTTTTCATGGATCCTAAGGAGGAACCCAACGCCGACGGGGACCGCCGCGACATGGCGGCCGAAAATTCTGACACGGTGGCTGTGAACAAGAAGCGGGCTCGCAGGGTGAGCTTTGCTGAGATGACATCTATTCACTTCTTCGACCGCGATGAGGAGTTCAATGAG...

CDS

3 records

下载 CDS FASTA

LOC131009519
ATGGATCCTAAGGAGGAACCCAACGCCGACGGGGACCGCCGCGACATGGCGGCCGAAAATTCTGACACGGTGGCTGTGAACAAGAAGCGGGCTCGCAGGGTGAGCTTTGCTGAGATGACATCTATTCACTTCTTCGACCGCGATGAGGAGTTCAATGAGACGTCTCAGGTGGAGACTGCGAAAATGGCGGACGATTCGCCAGCTGAATTCAGGTTCGGCGGGCTGTCGGAGCTGAGTAAGGAGTTTGGTGGTGATGATGA...

Protein

3 records

下载 Protein FASTA

XP_057792893.1
MDPKEEPNADGDRRDMAAENSDTVAVNKKRARRVSFAEMTSIHFFDRDEEFNETSQVETAKMADDSPAEFRFGGLSELSKEFGGDDDGGDNLDDEIMEMQRSFLRPIGSPSSGGSTMGSASSNDEDNFFGPVSANFIRPGRLSDSAASDDNHDLTMDSTAFSMHFRSLAGSESGIDLKTPTGGQLFFEEKTPTNSNKGSSVTYTLGKNHFPKSSVPATEGSESHNSNDMSLVLENPNKYDYEKPSPGLDAILAENRKNLL...

XP_057792894.1
MDPKEEPNADGDRRDMAAENSDTVAVNKKRARRVSFAEMTSIHFFDRDEEFNETSQVETAKMADDSPAEFRFGGLSELSKEFGGDDDGGDNLDDEIMEMQRSFLRPIGSPSSGGSTMGSASSNDEDNFFGPVSANFIRPGRLSDSAASDDNHDLTMDSTAFSMHFRSLAGSESGIDLKTPTGGQLFFEEKTPTNSNKGSSVTYTLGLDAILAENRKNLLHLIASDDITSPERNRGHVSSSVDHGNVLVNLSDSVRKGSDR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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