当前解析结果
SmilChr02G005561| 统一新 Gene ID | SmilChr02G005561 |
|---|---|
| 名称 | SmilChr02G005561 |
| 描述 | aspartyl protease family protein 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75546433 - 75548590 / + |
| NCBI Gene ID | LOC131009527 |
|---|---|
| GeneID | 131009527 |
| locus_tag | - |
| NCBI Name | LOC131009527 |
| 原始查询 | SmilChr02G005561 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease family protein 2-like |
| 产物 | aspartyl protease family protein 2-like |
| Arabidopsis | AT3G59080 (AT3G59080)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:825077] identity=60.5; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0314600- identity=52.4; qcov=0.991; evalue=3.39e-178; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009527 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057792907.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057792907.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057792907.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792907.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792907.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75547007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,C42 |
Chr2:75547022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,C42 |
Chr2:75547199 |
C |
CTA |
2bp_insertion | frameshift_variant | 3 | B50,C14,C42 |
Chr2:75547199 |
C |
CTA |
2bp_insertion | CDS_variant | 3 | B50,C14,C42 |
Chr2:75547200 |
CG |
C |
1bp_deletion | frameshift_variant | 3 | B50,C14,C42 |
Chr2:75547200 |
CG |
C |
1bp_deletion | CDS_variant | 3 | B50,C14,C42 |
Chr2:75547201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,B51,B66 |
Chr2:75547232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C33 |
Chr2:75547234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,C13,C39,C83 |
Chr2:75547236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,B51,B66 |
Chr2:75547255 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B129,B132,B61 |
Chr2:75547466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B14,C13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792907.1PF00026
Asp 170-223 aa
PF14543
TAXi_N 171-350 aa
PF00026
Asp 256-530 aa
PF14541
TAXi_C 378-529 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792907.1 |
Pfam | PF00026 |
Asp | Domain | 170 | 223 | 5.8e-19 | 69.4 | Eukaryotic aspartyl protease |
XP_057792907.1 |
Pfam | PF14543 |
TAXi_N | Domain | 171 | 350 | 2e-52 | 178.6 | Xylanase inhibitor N-terminal |
XP_057792907.1 |
Pfam | PF00026 |
Asp | Domain | 256 | 530 | 5.8e-19 | 69.4 | Eukaryotic aspartyl protease |
XP_057792907.1 |
Pfam | PF14541 |
TAXi_C | Domain | 378 | 529 | 2.2e-33 | 116.1 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。