当前解析结果
SmilChr02G005565| 统一新 Gene ID | SmilChr02G005565 |
|---|---|
| 名称 | SmilChr02G005565 |
| 描述 | uncharacterized SmilChr02G005565 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75572911 - 75575420 / - |
| NCBI Gene ID | LOC131009530 |
|---|---|
| GeneID | 131009530 |
| locus_tag | - |
| NCBI Name | LOC131009530 |
| 原始查询 | SmilChr02G005565 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:814975]; symbol=AT2G04360; hit=AT2G04360; species=arabidopsis; confidence=high |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:814975]; symbol=AT2G04360; hit=AT2G04360; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G04360 (AT2G04360)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:814975] identity=67.7; qcov=0.881; evalue=5.29e-110; confidence=high |
| Rice | Os08g0345400 (P0410E11.116)- identity=69.8; qcov=0.815; evalue=3.07e-100; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009530 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057792911.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057792911.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792911.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792911.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792911.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75573164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:75573191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C14,C42 |
Chr2:75573248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr2:75573531 |
TG |
T |
1bp_deletion | frameshift_variant | 172 | A11,A13,A14,A15,A16,A18,A20,A22,A24,A25,A3,A5,A6,A7,B1,B10,B100,B101,B103,B105,B106,B108,B109,B11,B112,B113,B114,B115,B118,B119,B120,B123,B124,B128,B13,B130,B131,B132,B133,B134,B135,B136,B137,B139,B14,B140,B15,B16,B18,B19,B2,B22,B24,B25,B29,B3,B30,B31,B32,B33,B34,B36,B38,B39,B4,B40,B41,B42,B43,B44,B47,B48,B49,B5,B52,B53,B57,B6,B60,B61,B62,B63,B64,B65,B68,B69,B70,B71,B72,B73,B74,B75,B78,B8,B80,B81,B82,B83,B84,B86,B87,B88,B89,B9,B90,B92,B93,B94,B97,C10,C12,C13,C14,C15,C17,C19,C20,C21,C22,C23,C24,C25,C28,C29,C3,C32,C33,C35,C36,C38,C39,C40,C42,C43,C46,C47,C48,C5,C50,C51,C53,C54,C56,C59,C6,C60,C61,C62,C63,C64,C65,C66,C68,C7,C70,C72,C73,C76,C77,C78,C79,C8,C80,C82,C83,C85,C86,D11,D2,D3,D4,D9 |
Chr2:75574045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,C60,C67 |
Chr2:75574728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:75575110 |
GT |
G |
1bp_deletion | frameshift_variant | 44 | A11,A16,A18,A3,B103,B111,B120,B124,B129,B134,B140,B16,B18,B48,B5,B50,B53,B54,B58,B66,B8,B80,B81,B82,B93,B94,B97,C13,C14,C19,C20,C32,C36,C41,C42,C43,C45,C46,C60,C68,C86,D10,D5,D6 |
Chr2:75575111 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B106,B35 |
Chr2:75575111 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B106,B35 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。