Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005566`

染色体: Chr02 坐标: 75576152-75579955 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005566`
名称	SmilChr02G005566
描述	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75576152 - 75579955 / `+`

ID 对照

NCBI Gene ID	`LOC131009533`
GeneID	`131009533`
locus_tag	`-`
NCBI Name	`LOC131009533`
原始查询	`SmilChr02G005566`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
产物	ribulose-1%2C5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase%2C chloroplastic
Arabidopsis	`AT3G07670` (AT3G07670) Rubisco methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819958] identity=74.1; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0725200` (OsSET12) - identity=75.1; qcov=0.886; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0009507 (chloroplast); GO:0016279 (protein-lysine N-methyltransferase activity); GO:0018026 (peptidyl-lysine monomethylation); GO:0030785 ([ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity)
KEGG	-
Pfam	PF00856 (SET); PF09273 (Rubis-subs-bind)
InterPro	-
eggNOG	-
NR	GeneID:131009533

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057792914.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057792914.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057792914.1`
4	Chloroplast thylakoid	类囊体	0.20000	`XP_057792914.1`
5	Nucleus	细胞核	0.00000	`XP_057792914.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75576257`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:75576297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B27,B7,C51,C74
`Chr2:75576322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr2:75576325`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr2:75576356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:75576379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:75576412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,D2
`Chr2:75576414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B117,B132,C87
`Chr2:75576422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B30,B42,B43,B48
`Chr2:75576425`	`CA`	`C`	1bp_deletion	frameshift_variant	119	A1,A13,A18,A2,A20,A4,A6,A7,A9,B1,B105,B107,B109,B11,B111,B114,B118,B119,B12,B121,B124,B125,B126,B128,B131,B132,B133,B134,B136,B138,B140,B15,B16,B21,B23,B25,B26,B28,B29,B30,B31,B33,B34,B35,B37,B38,B4,B40,B41,B44,B6,B61,B62,B63,B64,B65,B66,B71,B72,B73,B75,B76,B81,B82,B83,B84,B86,B88,B89,B90,B94,B96,B97,B99,C1,C12,C13,C16,C19,C20,C21,C25,C26,C3,C32,C33,C34,C36,C38,C40,C44,C45,C46,C49,C5,C51,C53,C56,C58,C59,C63,C64,C67,C68,C71,C73,C76,C82,C83,C86,C87,C9,D10,D11,D2,D3,D6,D7,D9
`Chr2:75576428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B84,D2
`Chr2:75576432`	`G`	`A`	EMS_canonical_SNV	stop_gained	10	B107,B121,B73,C12,C38,C53,C71,C82,D10,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792914.1

502 aa

251

502

SET

Rubis-subs-bind

PF00856 SET 99-303 aa PF09273 Rubis-subs-bind 335-469 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792914.1`	Pfam	`PF00856`	SET	Family	99	303	2.7e-10	41.4	SET domain
`XP_057792914.1`	Pfam	`PF09273`	Rubis-subs-bind	Domain	335	469	2.6e-18	67.7	Rubisco LSMT substrate-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936931.1
CCAAAGCAAGGAGATAAGGCAGGCAGCAGCAAAAGCAGCGCCATCGCCATGGCTGAAGCTTTAAGAATCCTCCAAATACCCACTTTCTCTCAAAATTCACCTCTCCACACAACCAGAATCCACTCCCACAGCAGCTTCGCCCCACCAGCAGCCAAAAGAGGCGGCAATTTCGACCGAATTCGGTGCTCGGTCGCCGCCGCCGGCGAGAACACCGCGGTGGAAGGAGTGACGTGGGGGTGCGACGTCGACTCCGTGGAAAA...

CDS

1 records

下载 CDS FASTA

LOC131009533
ATGGCTGAAGCTTTAAGAATCCTCCAAATACCCACTTTCTCTCAAAATTCACCTCTCCACACAACCAGAATCCACTCCCACAGCAGCTTCGCCCCACCAGCAGCCAAAAGAGGCGGCAATTTCGACCGAATTCGGTGCTCGGTCGCCGCCGCCGGCGAGAACACCGCGGTGGAAGGAGTGACGTGGGGGTGCGACGTCGACTCCGTGGAAAACGCGGCGGCGCTGCAGGCGTGGCTGTCGGAGAGCGGGCTCCCGCCGCA...

Protein

1 records

下载 Protein FASTA

XP_057792914.1
MAEALRILQIPTFSQNSPLHTTRIHSHSSFAPPAAKRGGNFDRIRCSVAAAGENTAVEGVTWGCDVDSVENAAALQAWLSESGLPPQKMGIQRVEVGERGLVALKNIRKGEKLLFVPPSLFITADSKWSCGEAGEVLKQYNVPDWPLLATYLISEASLMNSSRWSNYIAALPRQPYSLLYWTRSELDRYLEASQIRQRAIERINDVIGTYNDLRDRIFSKHPDLFPGEVFNMESYRWSFGILFSRLVRLPSMDGRVALVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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