Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005594

染色体: Chr02 坐标: 75692520-75693781 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005594
名称SmilChr02G005594
描述probable serine/threonine-protein kinase WNK11
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向75692520 - 75693781 / +

ID 对照

NCBI Gene IDLOC131009557
GeneID131009557
locus_tag-
NCBI NameLOC131009557
原始查询SmilChr02G005594

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable serine/threonine-protein kinase WNK11
产物probable serine/threonine-protein kinase WNK11
ArabidopsisAT5G55560 (AT5G55560)
Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835650]
identity=67.4; qcov=0.933; evalue=4.86e-148; confidence=high
RiceOs07g0584100 (OsWNK5)
-
identity=64.6; qcov=0.926; evalue=6.45e-133; confidence=high
GOGO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131009557

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057792945.1
2 Nucleus 细胞核 0.80000 XP_057792945.1
3 Cytoplasm 细胞质 0.80000 XP_057792945.1
4 Chromosome 染色体 0.00000 XP_057792945.1
5 Centromere 着丝粒 0.00000 XP_057792945.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:75692886 G A EMS_canonical_SNV CDS_variant 3 B113,B139,C36
Chr2:75692969 C T EMS_canonical_SNV CDS_variant 1 A20
Chr2:75692972 C T EMS_canonical_SNV CDS_variant 4 A10,B74,C70,C73
Chr2:75693098 C T EMS_canonical_SNV CDS_variant 1 B101
Chr2:75693218 C T EMS_canonical_SNV CDS_variant 1 C28
Chr2:75693266 G A EMS_canonical_SNV CDS_variant 1 B16
Chr2:75693413 C T EMS_canonical_SNV CDS_variant 1 B29
Chr2:75693446 G A EMS_canonical_SNV CDS_variant 2 B14,C14
Chr2:75693617 C T EMS_canonical_SNV CDS_variant 2 B70,C62
Chr2:75693620 C T EMS_canonical_SNV CDS_variant 4 B104,B113,B139,C36
Chr2:75693726 G A EMS_canonical_SNV CDS_variant 4 B24,B48,C61,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057792945.1
299 aa
N
1
150
299
PK_Tyr_Ser-Thr
Pkinase
C
PF07714 PK_Tyr_Ser-Thr 33-284 aa PF00069 Pkinase 33-288 aa
XP_057792946.1
299 aa
N
1
150
299
PK_Tyr_Ser-Thr
Pkinase
C
PF07714 PK_Tyr_Ser-Thr 33-284 aa PF00069 Pkinase 33-288 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792945.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 33 284 5.1e-35 121.7 Protein tyrosine and serine/threonine kinase
XP_057792945.1 Pfam PF00069 Pkinase Domain 33 288 1.5e-49 169.4 Protein kinase domain
XP_057792946.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 33 284 5.1e-35 121.7 Protein tyrosine and serine/threonine kinase
XP_057792946.1 Pfam PF00069 Pkinase Domain 33 288 1.5e-49 169.4 Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057936962.1
TCATAATCAAAGTATAGTTGAATCTCTCTCTATCTATCTCTATCTCTCTCTATATATATACATCCATATATGTGGCCTCACTTCGTTGATGGTTTGCTTCCAAGCAAATTTCTTCCTCAGCAATTAATATTACTCATCAAACTACACAAGATTAAAGGGGAGTGATGGGTCCATCAAAAACAAAGAGCCACGGCGGCGGCGACGAAGAAGAGAGAGAGGAGTTCGTGGAGGTCGATCCGTCGGGGCGATTCGGGAGGTAC...
XM_057936963.1
CTCTATATATATACATCCATATATGTGGCCTCACTTCGTTGATGGTTTGCTTCCAAGCAAATTTCTTCCTCAGCAATTAATATTACTCATCAAACTACACAAGATTAAAGGTAAGGGGAGTGATGGGTCCATCAAAAACAAAGAGCCACGGCGGCGGCGACGAAGAAGAGAGAGAGGAGTTCGTGGAGGTCGATCCGTCGGGGCGATTCGGGAGGTACGACGAGCTACTCGGGTGCGGCGCCGTGAAGAAAGTCTACCGC...

CDS

2 records

下载 CDS FASTA
LOC131009557
ATGGGTCCATCAAAAACAAAGAGCCACGGCGGCGGCGACGAAGAAGAGAGAGAGGAGTTCGTGGAGGTCGATCCGTCGGGGCGATTCGGGAGGTACGACGAGCTACTCGGGTGCGGCGCCGTGAAGAAAGTCTACCGCGCATTCGACCAGCGCGAGGGCCGCGACGTGGCGTGGAACCAAGTCCGCCTCCGCAACTTCTCCGCCGATCCCTCCGTCATCCTCCGCCTCCGCTCCGAGATCGACCTCCTCAAGTCCCTCCA...
LOC131009557
ATGGGTCCATCAAAAACAAAGAGCCACGGCGGCGGCGACGAAGAAGAGAGAGAGGAGTTCGTGGAGGTCGATCCGTCGGGGCGATTCGGGAGGTACGACGAGCTACTCGGGTGCGGCGCCGTGAAGAAAGTCTACCGCGCATTCGACCAGCGCGAGGGCCGCGACGTGGCGTGGAACCAAGTCCGCCTCCGCAACTTCTCCGCCGATCCCTCCGTCATCCTCCGCCTCCGCTCCGAGATCGACCTCCTCAAGTCCCTCCA...

Protein

2 records

下载 Protein FASTA
XP_057792945.1
MGPSKTKSHGGGDEEEREEFVEVDPSGRFGRYDELLGCGAVKKVYRAFDQREGRDVAWNQVRLRNFSADPSVILRLRSEIDLLKSLHHDNIILLYHFWNDPDHNTFNFITEACASGNLRDYRRKHRHVSLKALKKWGVQILRGLHYLHTHRPCIIHRDLNCSNIFINGNVGKVKIGDLGLAAAVGESHAAHSMIGTPEYMAPELYEEEYTELVDIYSFGMCVVEMATCEIPYSECDSLGKIYRKVTAGVMPRAMDDVEDH...
XP_057792946.1
MGPSKTKSHGGGDEEEREEFVEVDPSGRFGRYDELLGCGAVKKVYRAFDQREGRDVAWNQVRLRNFSADPSVILRLRSEIDLLKSLHHDNIILLYHFWNDPDHNTFNFITEACASGNLRDYRRKHRHVSLKALKKWGVQILRGLHYLHTHRPCIIHRDLNCSNIFINGNVGKVKIGDLGLAAAVGESHAAHSMIGTPEYMAPELYEEEYTELVDIYSFGMCVVEMATCEIPYSECDSLGKIYRKVTAGVMPRAMDDVEDH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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