当前解析结果
SmilChr02G005594| 统一新 Gene ID | SmilChr02G005594 |
|---|---|
| 名称 | SmilChr02G005594 |
| 描述 | probable serine/threonine-protein kinase WNK11 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75692520 - 75693781 / + |
| NCBI Gene ID | LOC131009557 |
|---|---|
| GeneID | 131009557 |
| locus_tag | - |
| NCBI Name | LOC131009557 |
| 原始查询 | SmilChr02G005594 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable serine/threonine-protein kinase WNK11 |
| 产物 | probable serine/threonine-protein kinase WNK11 |
| Arabidopsis | AT5G55560 (AT5G55560)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835650] identity=67.4; qcov=0.933; evalue=4.86e-148; confidence=high |
| Rice | Os07g0584100 (OsWNK5)- identity=64.6; qcov=0.926; evalue=6.45e-133; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009557 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057792945.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057792945.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057792945.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792945.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792945.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75692886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B139,C36 |
Chr2:75692969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr2:75692972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B74,C70,C73 |
Chr2:75693098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr2:75693218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr2:75693266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr2:75693413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr2:75693446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,C14 |
Chr2:75693617 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C62 |
Chr2:75693620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B113,B139,C36 |
Chr2:75693726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B48,C61,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792945.1PF07714
PK_Tyr_Ser-Thr 33-284 aa
PF00069
Pkinase 33-288 aa
XP_057792946.1PF07714
PK_Tyr_Ser-Thr 33-284 aa
PF00069
Pkinase 33-288 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792945.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 33 | 284 | 5.1e-35 | 121.7 | Protein tyrosine and serine/threonine kinase |
XP_057792945.1 |
Pfam | PF00069 |
Pkinase | Domain | 33 | 288 | 1.5e-49 | 169.4 | Protein kinase domain |
XP_057792946.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 33 | 284 | 5.1e-35 | 121.7 | Protein tyrosine and serine/threonine kinase |
XP_057792946.1 |
Pfam | PF00069 |
Pkinase | Domain | 33 | 288 | 1.5e-49 | 169.4 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。