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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005597

染色体: Chr02 坐标: 75706489-75708908 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005597
名称SmilChr02G005597
描述GCN5-related N-acetyltransferase 9
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向75706489 - 75708908 / +

ID 对照

NCBI Gene IDLOC131009561
GeneID131009561
locus_tag-
NCBI NameLOC131009561
原始查询SmilChr02G005597

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述GCN5-related N-acetyltransferase 9
产物GCN5-related N-acetyltransferase 9
ArabidopsisAT2G04845 (AT2G04845)
Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:815030]
identity=70.9; qcov=0.669; evalue=6e-57; confidence=high
RiceOs03g0194400
-
identity=67.2; qcov=0.697; evalue=4.28e-52; confidence=high
GOGO:0006473 (protein acetylation); GO:0008080 (N-acetyltransferase activity)
KEGG-
PfamPF00583 (Acetyltransf_1); PF13302 (Acetyltransf_3)
InterPro-
eggNOG-
NRGeneID:131009561

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057792949.1
2 Nucleus 细胞核 1.00000 XP_057792950.1
3 Cytoplasm 细胞质 1.00000 XP_057792950.1
4 Nucleoplasm 核质 0.40000 XP_057792950.1
5 Chromosome 染色体 0.00000 XP_057792949.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:75707232 CT C 1bp_deletion frameshift_variant 1 B73
Chr2:75707232 CT C 1bp_deletion CDS_variant 1 B73
Chr2:75707281 T TA 1bp_insertion frameshift_variant 1 B80
Chr2:75707281 T TA 1bp_insertion CDS_variant 1 B80
Chr2:75707287 A AT 1bp_insertion frameshift_variant 2 B120,B31
Chr2:75707287 A AT 1bp_insertion CDS_variant 2 B120,B31
Chr2:75707288 A AT 1bp_insertion frameshift_variant 32 B1,B12,B131,B133,B136,B137,B17,B25,B27,B28,B51,B52,B66,B68,B78,B81,C10,C12,C2,C25,C3,C31,C32,C33,C37,C39,C54,C68,C71,C72,C82,D10
Chr2:75707411 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:75707462 C CAA 2bp_insertion frameshift_variant 1 D11
Chr2:75707462 C CAA 2bp_insertion CDS_variant 1 D11
Chr2:75707466 G GTA 2bp_insertion frameshift_variant 1 D11
Chr2:75707466 G GTA 2bp_insertion CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792949.1
256 aa
N
1
128
256
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 70-219 aa PF00583 Acetyltransf_1 143-219 aa
XP_057792950.1
195 aa
N
1
98
195
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 9-158 aa PF00583 Acetyltransf_1 82-158 aa
XP_057792951.1
195 aa
N
1
98
195
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 9-158 aa PF00583 Acetyltransf_1 82-158 aa
XP_057792952.1
195 aa
N
1
98
195
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 9-158 aa PF00583 Acetyltransf_1 82-158 aa
XP_057792953.1
195 aa
N
1
98
195
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 9-158 aa PF00583 Acetyltransf_1 82-158 aa
XP_057792954.1
195 aa
N
1
98
195
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 9-158 aa PF00583 Acetyltransf_1 82-158 aa
XP_057792955.1
175 aa
N
1
88
175
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 60-138 aa PF00583 Acetyltransf_1 62-138 aa
XP_057792956.1
175 aa
N
1
88
175
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 60-138 aa PF00583 Acetyltransf_1 62-138 aa
XP_057792957.1
175 aa
N
1
88
175
Acetyltransf_3
Acetyltransf_1
C
PF13302 Acetyltransf_3 60-138 aa PF00583 Acetyltransf_1 62-138 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792949.1 Pfam PF13302 Acetyltransf_3 Domain 70 219 1.8e-17 65.1 Acetyltransferase (GNAT) domain
XP_057792949.1 Pfam PF00583 Acetyltransf_1 Family 143 219 1.4e-06 29.3 Acetyltransferase (GNAT) family
XP_057792950.1 Pfam PF13302 Acetyltransf_3 Domain 9 158 7.6e-18 66.3 Acetyltransferase (GNAT) domain
XP_057792950.1 Pfam PF00583 Acetyltransf_1 Family 82 158 9.2e-07 29.9 Acetyltransferase (GNAT) family
XP_057792951.1 Pfam PF13302 Acetyltransf_3 Domain 9 158 7.6e-18 66.3 Acetyltransferase (GNAT) domain
XP_057792951.1 Pfam PF00583 Acetyltransf_1 Family 82 158 9.2e-07 29.9 Acetyltransferase (GNAT) family
XP_057792952.1 Pfam PF13302 Acetyltransf_3 Domain 9 158 7.6e-18 66.3 Acetyltransferase (GNAT) domain
XP_057792952.1 Pfam PF00583 Acetyltransf_1 Family 82 158 9.2e-07 29.9 Acetyltransferase (GNAT) family
XP_057792953.1 Pfam PF13302 Acetyltransf_3 Domain 9 158 7.6e-18 66.3 Acetyltransferase (GNAT) domain
XP_057792953.1 Pfam PF00583 Acetyltransf_1 Family 82 158 9.2e-07 29.9 Acetyltransferase (GNAT) family
XP_057792954.1 Pfam PF13302 Acetyltransf_3 Domain 9 158 7.6e-18 66.3 Acetyltransferase (GNAT) domain
XP_057792954.1 Pfam PF00583 Acetyltransf_1 Family 82 158 9.2e-07 29.9 Acetyltransferase (GNAT) family
XP_057792955.1 Pfam PF13302 Acetyltransf_3 Domain 60 138 9.7e-12 46.5 Acetyltransferase (GNAT) domain
XP_057792955.1 Pfam PF00583 Acetyltransf_1 Family 62 138 1.5e-06 29.2 Acetyltransferase (GNAT) family
XP_057792956.1 Pfam PF13302 Acetyltransf_3 Domain 60 138 9.7e-12 46.5 Acetyltransferase (GNAT) domain
XP_057792956.1 Pfam PF00583 Acetyltransf_1 Family 62 138 1.5e-06 29.2 Acetyltransferase (GNAT) family
XP_057792957.1 Pfam PF13302 Acetyltransf_3 Domain 60 138 9.7e-12 46.5 Acetyltransferase (GNAT) domain
XP_057792957.1 Pfam PF00583 Acetyltransf_1 Family 62 138 1.5e-06 29.2 Acetyltransferase (GNAT) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057936966.1
CATCAAGATTTGAATTTTGAAAATTTTAACTAATTGTTCTATATACCAAAGCAAATTAAAAAAAAAAATAGAGTCGATATACACGATATTCCCTTTCAATTTTTTTTTTAATTTTAAATTTTTTTGAGAATAAATTTTTATTTTTTTTAGTTTGACTAGTTAGTTTTACAATATGTGAAAAACAATGTAAATTTGTGTTAAAAATATACTGTCGCATTGGGTCGATAAAAGTAGTCTCATAATCAACATTAATTAATAAT...
XM_057936967.1
ATCCTTATTTTTAATTGGGCGGAACAAGAATTTGACTCTTCAATTTGGATATAAATAAATCTTCAAAACAGACTCATTCAGATTTTCACCTAACTATTTAGAAACAGCCAAATAAAGGGATATACAAGAAGAATGGGGGTGAGTATAGTAGGAGAAAGAGTGATTCTGGTGCCATACATGAAGGAGCATGTGCCCAGGTACCATGTTTGGATGCAAGACCCTGCCATCCTCCAAGCCACCGCGTCCGAGCCCCTCACGCT...

CDS

9 records

下载 CDS FASTA
LOC131009561
ATGAGGCGTTCGATCTTTTGTCTCACTCAAAATATACCTCTAGTTTGGAGCTCTTTCTTGATTTCAAAAAAAAAAAAAATCATTCTAATCGAATTATACGTTCTTGTCTGGAAGTTTAATGGAATTGTGTCGATCAATGCTGAAATTCAATGTTTATTCTTTAGTGCAGGATATACAAGAAGAATGGGGGTGAGTATAGTAGGAGAAAGAGTGATTCTGGTGCCATACATGAAGGAGCATGTGCCCAGGTACCATGTTTG...
LOC131009561
ATGGGGGTGAGTATAGTAGGAGAAAGAGTGATTCTGGTGCCATACATGAAGGAGCATGTGCCCAGGTACCATGTTTGGATGCAAGACCCTGCCATCCTCCAAGCCACCGCGTCCGAGCCCCTCACGCTCGATCAGGAATACGAGATGCAGCTTTCGTGGGTTCAAGACCCCCTTAAGCAGACTTTCATAGTGCTGGACAAAGAATTAGTGGTTGGAGACTTCAACCATGGGGAACCCCATACCGAAGCTATGGTTGGTGA...

Protein

9 records

下载 Protein FASTA
XP_057792949.1
MRRSIFCLTQNIPLVWSSFLISKKKKIILIELYVLVWKFNGIVSINAEIQCLFFSAGYTRRMGVSIVGERVILVPYMKEHVPRYHVWMQDPAILQATASEPLTLDQEYEMQLSWVQDPLKQTFIVLDKELVVGDFNHGEPHTEAMVGDVNIFMNDLDDPQIAEVEIMIAEQKSRGKGLAKESILLMIAFAVKNFGIHNFRAKIGLANEASLNLFKKLGFMEASCSEIFKEVTLELPVTESKTEELHQLLANAATHF
XP_057792950.1
MGVSIVGERVILVPYMKEHVPRYHVWMQDPAILQATASEPLTLDQEYEMQLSWVQDPLKQTFIVLDKELVVGDFNHGEPHTEAMVGDVNIFMNDLDDPQIAEVEIMIAEQKSRGKGLAKESILLMIAFAVKNFGIHNFRAKIGLANEASLNLFKKLGFMEASCSEIFKEVTLELPVTESKTEELHQLLANAATHF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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