Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005602`

染色体: Chr02 坐标: 75732133-75735444 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005602`
名称	SmilChr02G005602
描述	polygalacturonase
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75732133 - 75735444 / `-`

ID 对照

NCBI Gene ID	`LOC131009569`
GeneID	`131009569`
locus_tag	`-`
NCBI Name	`LOC131009569`
原始查询	`SmilChr02G005602`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polygalacturonase
产物	polygalacturonase
Arabidopsis	`AT2G04790` (AT2G04790) PTB domain engulfment adapter [Source:NCBI gene (formerly Entrezgene);Acc:815022] identity=47.2; qcov=0.937; evalue=1.16e-46; confidence=medium
Rice	`Os02g0588600` - identity=45.9; qcov=0.701; evalue=3.88e-29; confidence=medium
GO	GO:0004650 (polygalacturonase activity); GO:0005975 (carbohydrate metabolic process)
KEGG	smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00295 (Glyco_hydro_28)
InterPro	-
eggNOG	-
NR	GeneID:131009569

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057792963.1`
2	Cytosol	细胞质基质	1.00000	`XP_057792966.1`
3	Endoplasmic reticulum	内质网	0.60000	`XP_057792967.1`
4	Cytoplasm	细胞质	0.60000	`XP_057792966.1`
5	Lipid droplet	脂滴	0.60000	`XP_057792967.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75732373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:75732414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:75732693`	`ACG`	`A`	2bp_deletion	frameshift_variant	1	B104
`Chr2:75732693`	`ACG`	`A`	2bp_deletion	CDS_variant	1	B104
`Chr2:75732760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C13,C35,C63,C67,C74
`Chr2:75732997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr2:75733262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr2:75733429`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:75734622`	`AC`	`A`	1bp_deletion	frameshift_variant	155	A10,A11,A13,A14,A16,A18,A19,A2,A21,A22,A23,A25,A3,A6,A8,B1,B10,B100,B101,B102,B106,B107,B109,B110,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B129,B131,B133,B135,B136,B137,B138,B140,B15,B2,B20,B22,B27,B28,B3,B30,B31,B32,B34,B37,B4,B41,B42,B43,B45,B46,B48,B49,B51,B52,B54,B56,B57,B6,B61,B62,B69,B7,B70,B71,B73,B74,B75,B78,B80,B81,B82,B83,B85,B86,B87,B89,B90,B91,B92,B93,B94,B96,B98,B99,C1,C11,C12,C13,C14,C15,C19,C21,C25,C27,C28,C3,C30,C31,C32,C33,C35,C37,C39,C42,C44,C46,C47,C49,C53,C54,C56,C59,C62,C63,C67,C68,C69,C7,C70,C71,C72,C73,C74,C76,C77,C78,C79,C80,C81,C82,C83,C84,C85,C86,C87,C9,D11,D4,D8
`Chr2:75734625`	`TG`	`T`	1bp_deletion	frameshift_variant	155	A10,A11,A13,A14,A16,A18,A19,A2,A21,A22,A23,A25,A3,A6,A8,B1,B10,B100,B101,B102,B106,B107,B109,B110,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B129,B131,B133,B135,B136,B137,B138,B140,B15,B2,B20,B22,B27,B28,B3,B30,B31,B32,B34,B37,B4,B41,B42,B43,B45,B46,B48,B49,B51,B52,B54,B56,B57,B6,B61,B62,B69,B7,B70,B71,B73,B74,B75,B78,B80,B81,B82,B83,B85,B86,B87,B89,B90,B91,B92,B93,B94,B96,B98,B99,C1,C11,C12,C13,C14,C15,C19,C21,C25,C27,C28,C3,C30,C31,C32,C33,C35,C37,C39,C42,C44,C46,C47,C49,C53,C54,C56,C59,C62,C63,C67,C68,C69,C7,C70,C71,C72,C73,C74,C76,C77,C78,C79,C80,C81,C82,C83,C84,C85,C86,C87,C9,D11,D4,D8
`Chr2:75734634`	`ATG`	`A`	2bp_deletion	frameshift_variant	101	A11,A14,A16,A18,A2,A21,A23,A25,A3,A6,B1,B10,B102,B107,B111,B112,B114,B115,B119,B120,B123,B124,B126,B127,B128,B135,B2,B20,B22,B28,B3,B30,B31,B32,B34,B37,B42,B43,B45,B48,B49,B56,B6,B61,B69,B7,B70,B71,B73,B74,B75,B78,B80,B81,B82,B83,B85,B86,B89,B90,B91,B92,B93,B94,B96,B98,C1,C14,C15,C21,C27,C28,C3,C30,C31,C32,C42,C44,C46,C47,C53,C56,C59,C62,C63,C68,C7,C70,C72,C73,C74,C76,C79,C80,C81,C83,C85,C86,C9,D4,D8
`Chr2:75734673`	`G`	`GTC`	2bp_insertion	frameshift_variant	3	B13,B52,C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792963.1

550 aa

275

550

Glyco_hydro_28

PF00295 Glyco_hydro_28 195-523 aa

XP_057792965.1

429 aa

214

429

Glyco_hydro_28

PF00295 Glyco_hydro_28 74-402 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792963.1`	Pfam	`PF00295`	Glyco_hydro_28	Repeat	195	523	1.6e-92	310.8	Glycosyl hydrolases family 28
`XP_057792965.1`	Pfam	`PF00295`	Glyco_hydro_28	Repeat	74	402	7.8e-93	311.8	Glycosyl hydrolases family 28

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057936985.1
GAACTTGTGGATATGAATAAATATGTAAAAAAAAAATGTTGCAGAGGAATTTCGTGAGGGAGAGATTGAAATAATTGGTACGACACCCACATCCACATATATATACATATATGAGAAGCCCAAAAGTAGAAGAATCGGATAAGGTGATGGCGGCGTTATCATCAGGTGCAAGAATGAGTAGCAGCAGCAGCAGAGATGAAGTTTACGTAGCAGCAGTGGCGCTCAAGGGCCCTGCTCAGCTTCTCTTTTCCACTGCCTAC...

XM_057936980.1
ACTTGTGGATATGAATAAATATGTAAAAAAAAAATGTTGCAGAGGAATTTCGTGAGGGAGAGATTGAAATAATTGGTACGACACCCACATCCACATATATATACATATATGAGAAGCCCAAAAGTAGAAGAATCGGATAAGGTGATGGCGGCGTTATCATCAGGTGCAAGAATGAGTAGCAGCAGCAGCAGAGATGAAGTTTACGTAGCAGCAGTGGCGCTCAAGGGCCCTGCTCAGCTTCTCTTTTCCACTGCCTACTC...

CDS

5 records

下载 CDS FASTA

LOC131009569
ATGAGAAGCCCAAAAGTAGAAGAATCGGATAAGGTGATGGCGGCGTTATCATCAGGTGCAAGAATGAGTAGCAGCAGCAGCAGAGATGAAGTTTACGTAGCAGCAGTGGCGCTCAAGGGCCCTGCTCAGCTTCTCTTTTCCACTGCCTACTCTCTCAATTTCTGGGATTTGCAGCATTTCATGGTCATCCTCAAACACCGACACCAACACGAGGCTACAGTATATGATTTTCAGCCAGAGGATCCTGAAAACATATGGGT...

LOC131009569
ATGCCAAAGCAGATATTGATGATGATGCACTCCACAAATTCAACCACACCTGGGACACTCACCTCGTCCTCGGCTCTCATGATTGTCGACATTATACTCAAGTTACTATCATTGGCCGCCACCTCCCAGACGGTGTTCGACATAACAAAATACGGCGCGACGCGCGGCGCAGACATCAGCGAGGCGTTGATGAAGGCATGGAAAGACGCAATCGCATCAGCAACGGCGAGCCAGATCCTGATCCCGGCCGGCGACTGGAC...

Protein

5 records

下载 Protein FASTA

XP_057792963.1
MRSPKVEESDKVMAALSSGARMSSSSSRDEVYVAAVALKGPAQLLFSTAYSLNFWDLQHFMVILKHRHQHEATVYDFQPEDPENIWVAAAALSRTKIPGAILVRKLAKLPKRKCWFVGYAKADIDDDALHKFNHTWDTHLVLGSHDCRHYTQVLQLLSLAATSQTVFDITKYGATRGADISEALMKAWKDAIASATASQILIPAGDWTLSQAHLAGPNKSPINLEVKGTLKAYPDPAKLPVKTYEWVTINYVNFLTISGG...

XP_057792965.1
MPKQILMMMHSTNSTTPGTLTSSSALMIVDIILKLLSLAATSQTVFDITKYGATRGADISEALMKAWKDAIASATASQILIPAGDWTLSQAHLAGPNKSPINLEVKGTLKAYPDPAKLPVKTYEWVTINYVNFLTISGGGVFDGQGQQAWKANDCHKNSKCAKLPINLSLNFINNSLIQDVTTKDSKNFHVNCISSANVTFQRFTVSAPGDSVNTDGIHIARSSNVRVLDSVIETGDDCISMGDELTDVLIRGVKCGPGH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器