当前解析结果
SmilChr03G000001| 统一新 Gene ID | SmilChr03G000001 |
|---|---|
| 名称 | SmilChr03G000001 |
| 描述 | importin subunit alpha-4-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 40523 - 42621 / - |
| NCBI Gene ID | LOC131015719 |
|---|---|
| GeneID | 131015719 |
| locus_tag | - |
| NCBI Name | LOC131015719 |
| 原始查询 | SmilChr03G000001 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | importin subunit alpha-4-like |
| 产物 | importin subunit alpha-4-like |
| Arabidopsis | AT1G09270 (IMPA-4)importin alpha isoform 4 [Source:NCBI gene (formerly Entrezgene);Acc:837448] identity=40.7; qcov=0.511; evalue=1.97e-15; confidence=low |
| Rice | Os01g0253300 (rImpa1a)- identity=36.8; qcov=0.615; evalue=2.05e-12; confidence=low |
| GO | GO:0005634 (nucleus); GO:0006607 (NLS-bearing protein import into nucleus); GO:0008139 (nuclear localization sequence binding); GO:0061608 (nuclear import signal receptor activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015719 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057800123.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057800123.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057800123.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800123.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800123.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:40733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B23 |
Chr3:40752 |
G |
A |
EMS_canonical_SNV | stop_gained | 18 | A13,A25,A4,B121,B128,B130,B25,B50,B63,B73,B91,B93,C10,C29,C50,C51,C71,D8 |
Chr3:40803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:40822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:40851 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,C72 |
Chr3:41042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B135,B23,C18,C2,C78 |
Chr3:41053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:41272 |
A |
ATC |
2bp_insertion | frameshift_variant | 34 | B1,B128,B130,B132,B140,B18,B29,B32,B34,B37,B38,B39,B5,B70,B8,B83,B85,B89,B90,C13,C16,C21,C26,C28,C35,C38,C49,C59,C63,C66,C77,C79,D6,D7 |
Chr3:41579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C74,C87 |
Chr3:41630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr3:41663 |
GTT |
G |
2bp_deletion | frameshift_variant | 3 | A11,B1,C71 |
Chr3:41663 |
GTT |
G |
2bp_deletion | CDS_variant | 3 | A11,B1,C71 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。