Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000006`

染色体: Chr03 坐标: 85191-87542 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000006`
名称	SmilChr03G000006
描述	importin subunit alpha-2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	85191 - 87542 / `-`

ID 对照

NCBI Gene ID	`LOC131016909`
GeneID	`131016909`
locus_tag	`-`
NCBI Name	`LOC131016909`
原始查询	`SmilChr03G000006`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	importin subunit alpha-2-like
产物	importin subunit alpha-2-like
Arabidopsis	`AT4G16143` (IMPA-2) importin alpha isoform 2 [Source:NCBI gene (formerly Entrezgene);Acc:827302] identity=44.8; qcov=0.752; evalue=1.55e-58; confidence=medium
Rice	`Os01g0253300` (rImpa1a) - identity=43.8; qcov=0.744; evalue=1.83e-57; confidence=medium
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006607 (NLS-bearing protein import into nucleus); GO:0008139 (nuclear localization sequence binding); GO:0061608 (nuclear import signal receptor activity)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF00514 (Arm)
InterPro	-
eggNOG	-
NR	GeneID:131016909

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801694.1`
2	Cytoplasm	细胞质	0.80000	`XP_057801694.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801694.1`
4	Chromosome	染色体	0.00000	`XP_057801694.1`
5	Centromere	着丝粒	0.00000	`XP_057801694.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:85395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B131,B24,C23
`Chr3:85402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B102,B17,B47,B53
`Chr3:85475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:85501`	`CT`	`C`	1bp_deletion	frameshift_variant	97	A14,A18,A5,A7,B1,B10,B104,B106,B111,B120,B123,B125,B128,B130,B132,B133,B135,B137,B140,B18,B21,B26,B28,B29,B3,B32,B34,B37,B38,B39,B40,B41,B44,B47,B48,B5,B57,B60,B63,B69,B70,B77,B8,B80,B82,B83,B85,B89,B9,B90,B92,B93,B95,B97,C13,C16,C17,C21,C22,C25,C26,C28,C30,C32,C33,C35,C38,C42,C43,C46,C47,C49,C5,C52,C53,C55,C56,C58,C59,C60,C61,C63,C64,C66,C68,C71,C75,C77,C79,C8,C80,C83,C86,C87,C9,D6,D7
`Chr3:85718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr3:85721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:85822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr3:85872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr3:86213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr3:86315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B127,C54,D6
`Chr3:86347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B46,C76
`Chr3:86357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B85,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801694.1

360 aa

180

360

Arm

PF00514 Arm 82-122 aa PF00514 Arm 123-162 aa

XP_057801695.1

359 aa

180

359

Arm

PF00514 Arm 81-121 aa PF00514 Arm 122-161 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801694.1`	Pfam	`PF00514`	Arm	Repeat	82	122	2.5e-30	104.2	Armadillo/beta-catenin-like repeat
`XP_057801694.1`	Pfam	`PF00514`	Arm	Repeat	123	162	2.5e-30	104.2	Armadillo/beta-catenin-like repeat
`XP_057801695.1`	Pfam	`PF00514`	Arm	Repeat	81	121	2.5e-30	104.2	Armadillo/beta-catenin-like repeat
`XP_057801695.1`	Pfam	`PF00514`	Arm	Repeat	122	161	2.5e-30	104.2	Armadillo/beta-catenin-like repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945711.1
GTCATTGTTGTACGTTATCACCGGTTCATGATGTTTCTTATATAGGAATATTGTTTAAATCTTTGGGAAGCGGATTTCAAAATTCAAAAATATATTACGATTAGGTCTTCTGAGTGCAAGCGCCTCTTTAGAATGTAGAGTATAAAAGTTGAAAACCATTTTTCGTATTTCTCCCAACAAAAACTCCCCCTTCCTACTTCTCTCTTGTCTGAGCAATGGCACCACTACGACGGAGCAAAAGGCTGAAGGCGAAGGCGACG...

XM_057945712.1
GATTTCAAAATTCAAAAATATATTACGATTAGGTCTTCTGAGTGCAAGCGCCTCTTTAGAATGTAGAGTATAAAAGTTGAAAACCATTTTTCGTATTTCTCCCAACAAAAACTCCCCCTTCCTACTTCTCTCTTGTCTGAGCAATGGCACCACTACGACGGAGCAAAAGGCTGAAGGCGAAGGCGACGTCGACGTCGGAGGTTGATCGTTTCTACACTCGCGAGAAGAAGCCCCGTGACCGTGAACCCCCCTCACGATTG...

CDS

2 records

下载 CDS FASTA

LOC131016909
ATGGCACCACTACGACGGAGCAAAAGGCTGAAGGCGAAGGCGACGTCGACGTCGGAGGTTGATCGTTTCTACACTCGCGAGAAGAAGCCCCGTGACCGTGAACCCCCCTCACGATTGCCTTCTGCTGCTGATAGGGATTTAGATTTACAATTAGTGATGTCTGGTATCCTTTCTGATGATAGCAAGTTGCAGCTTGATTCTACTACGCAATTGCTAAATTTAGTTTCTGTTGACAACCCTAACCCTATGATTGATCAAGT...

Protein

2 records

下载 Protein FASTA

XP_057801694.1
MAPLRRSKRLKAKATSTSEVDRFYTREKKPRDREPPSRLPSAADRDLDLQLVMSGILSDDSKLQLDSTTQLLNLVSVEDNPNPMIDQVVQLGAVPRFVEFLKRDDYPQLQFKAILVLKNIAAANTQVVINSGAVPVFVKLLESSSHDLQTCEQVAWSLGNIAGESFSCCDVVLNCGALRPLLTLSEKHNNSLSFLRIATRTLTNIFETLTNISGGAPKVPLQQVLFAIRTFKSLLDLKDEEVLKEACWALFYITHYKNGI...

XP_057801695.1
MAPLRRSKRLKAKATSTSEVDRFYTREKKPRDREPPSRLPSAADRDLDLQLVMSGILSDDSKLQLDSTTQLLNLVSVDNPNPMIDQVVQLGAVPRFVEFLKRDDYPQLQFKAILVLKNIAAANTQVVINSGAVPVFVKLLESSSHDLQTCEQVAWSLGNIAGESFSCCDVVLNCGALRPLLTLSEKHNNSLSFLRIATRTLTNIFETLTNISGGAPKVPLQQVLFAIRTFKSLLDLKDEEVLKEACWALFYITHYKNGIE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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