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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000012

染色体: Chr03 坐标: 113722-128260 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000012
名称SmilChr03G000012
描述flavin mononucleotide hydrolase 1, chloroplatic-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向113722 - 128260 / +

ID 对照

NCBI Gene IDLOC131016945
GeneID131016945
locus_tag-
NCBI NameLOC131016945
原始查询SmilChr03G000012

查看完整 ID 对照表

功能注释

来源GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述flavin mononucleotide hydrolase 1, chloroplatic-like
产物flavin mononucleotide hydrolase 1%2C chloroplatic-like
ArabidopsisAT1G79790 (FHY1)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844318]
identity=62.1; qcov=0.787; evalue=1.11e-61; confidence=high
RiceOs11g0300400
-
identity=54.5; qcov=0.185; evalue=3.23e-06; confidence=weak
GO-
KEGGsmil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
PfamPF00702 (Hydrolase); PF13242 (Hydrolase_like); PF13419 (HAD_2)
InterPro-
eggNOG-
NRGeneID:131016945

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057801741.1
2 Cytosol 细胞质基质 1.00000 XP_057801761.1
3 Chloroplast stroma 叶绿体基质 1.00000 XP_057801741.1
4 Cytoplasm 细胞质 0.80000 XP_057801761.1
5 Nucleus 细胞核 0.00000 XP_057801741.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:123136 G A EMS_canonical_SNV CDS_variant 1 C49
Chr3:123167 A AGC 2bp_insertion frameshift_variant 1 A15
Chr3:123167 A AGC 2bp_insertion CDS_variant 1 A15
Chr3:123191 C T EMS_canonical_SNV stop_gained 32 A13,A5,B11,B113,B125,B126,B127,B131,B4,B40,B41,B48,B62,B67,B69,B97,C1,C10,C12,C13,C2,C20,C27,C37,C46,C51,C55,C58,C73,C80,C85,D9
Chr3:123199 G A EMS_canonical_SNV CDS_variant 2 B129,B50
Chr3:123207 C T EMS_canonical_SNV CDS_variant 5 B10,B16,B39,C41,D4
Chr3:123252 C T EMS_canonical_SNV CDS_variant 3 B30,C27,C69
Chr3:123292 C T EMS_canonical_SNV CDS_variant 4 A1,B27,B97,C73
Chr3:123311 C T EMS_canonical_SNV CDS_variant 1 B78
Chr3:123312 C T EMS_canonical_SNV CDS_variant 5 B34,B37,B53,B72,C8
Chr3:123354 CT C 1bp_deletion frameshift_variant 4 A9,B37,B9,C26
Chr3:123354 CT C 1bp_deletion CDS_variant 4 A9,B37,B9,C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801741.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801742.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801743.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801744.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801745.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801746.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801747.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801748.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801749.1
252 aa
N
1
126
252
HAD_2
Hydrolase
C
PF13419 HAD_2 135-232 aa PF00702 Hydrolase 139-230 aa
XP_057801750.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801752.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801753.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801754.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801755.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801756.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801757.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801758.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801759.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801760.1
251 aa
N
1
126
251
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 135-231 aa PF00702 Hydrolase 139-229 aa PF13242 Hydrolase_like 191-245 aa
XP_057801761.1
178 aa
N
1
89
178
HAD_2
Hydrolase
Hydrolase_like
C
PF13419 HAD_2 63-158 aa PF00702 Hydrolase 67-156 aa PF13242 Hydrolase_like 118-172 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801741.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801741.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801742.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801742.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801743.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801743.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801744.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801744.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801745.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801745.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801746.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801746.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801747.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801747.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801748.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801748.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801749.1 Pfam PF13419 HAD_2 Family 135 232 1.4e-10 42.2 Haloacid dehalogenase-like hydrolase
XP_057801749.1 Pfam PF00702 Hydrolase Domain 139 230 2.1e-11 45.3 haloacid dehalogenase-like hydrolase
XP_057801750.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801750.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801750.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801752.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801752.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801752.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801753.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801753.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801753.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801754.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801754.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801754.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801755.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801755.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801755.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801756.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801756.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801756.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801757.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801757.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801757.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801758.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801758.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801758.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801759.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801759.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801759.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801760.1 Pfam PF13419 HAD_2 Family 135 231 3.4e-11 44.2 Haloacid dehalogenase-like hydrolase
XP_057801760.1 Pfam PF00702 Hydrolase Domain 139 229 3.5e-12 47.8 haloacid dehalogenase-like hydrolase
XP_057801760.1 Pfam PF13242 Hydrolase_like Domain 191 245 8.1e-05 23.2 HAD-hyrolase-like
XP_057801761.1 Pfam PF13419 HAD_2 Family 63 158 2e-11 44.9 Haloacid dehalogenase-like hydrolase
XP_057801761.1 Pfam PF00702 Hydrolase Domain 67 156 2.4e-12 48.4 haloacid dehalogenase-like hydrolase
XP_057801761.1 Pfam PF13242 Hydrolase_like Domain 118 172 4.7e-05 24.0 HAD-hyrolase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

20 records

下载 cDNA FASTA
XM_057945760.1
CTCTCGCTTCGTCAGCCGCCGCCAGAACATCAAGGCTCGAGTTTCCAAGGAGCAGCAGCCGCTTCGCACTTCTCTCCCTCCCTCCTTCTTTCTTTCCTTCGGAGAAGCGCCGCCGCTCTCGCTTCGTCCGCCGCCAGAACATCAAGGCTCGAGTTTCCAAGGAGCAGTAGCCGCTTCGCACTTCTCTCCCTCCCTCCTTCTTTCTCTCCTTCGGAGAAGCGCCGCCGCTCTCGCTTCGTCCGCCGCCAGAACATCAAGGC...
XM_057945765.1
CTCTCGCTTCGTCAGCCGCCGCCAGAACATCAAGGCTCGAGTTTCCAAGGAGCAGCAGCCGCTTCGCACTTCTCTCCCTCCCTCCTTCTTTCTTTCCTTCGGAGAAGCGCCGCCGCTCTCGCTTCGTCCGCCGCCAGAACATCAAGGCTCGAGTTTCCAAGGAGCAGTAGCCGCTTCGCACTTCTCTCCCTCCCTCCTTCTTTCTCTCCTTCGGAGAAGCGCCGCCGCTCTCGCTTCGTCCGCCGCCAGAACATCAAGGC...

CDS

20 records

下载 CDS FASTA
LOC131016945
ATGGCAGCTCATACATTGGTGTGGAGATTCAGTAGCTTTCCGGTGGTAAAAGTAGAGCAACGGCCGCCATTAACAGCATCCCCATATTCTACTAACCGTGAAAAGGATATGCCCCTCTCTCACAAAAGCACCACCACCACCACCACCGTCGCTGCCAACGATACCACAAGAAAGCTGCCTATTCTGCTTTTCGACATTATGGACACAGTCGTCCGCGATCCTTTTTACCACGACATCCCTGCCTTTTTCGGAATGTCTAT...
LOC131016945
ATGGCAGCTCATACATTGGTGTGGAGATTCAGTAGCTTTCCGGTGGTAAAAGTAGAGCAACGGCCGCCATTAACAGCATCCCCATATTCTACTAACCGTGAAAAGGATATGCCCCTCTCTCACAAAAGCACCACCACCACCACCACCGTCGCTGCCAACGATACCACAAGAAAGCTGCCTATTCTGCTTTTCGACATTATGGACACAGTCGTCCGCGATCCTTTTTACCACGACATCCCTGCCTTTTTCGGAATGTCTAT...

Protein

20 records

下载 Protein FASTA
XP_057801741.1
MAAHTLVWRFSSFPVVKVEQRPPLTASPYSTNREKDMPLSHKSTTTTTTVAANDTTRKLPILLFDIMDTVVRDPFYHDIPAFFGMSMKELLECKHPTAWLEFEKGLINEVELAQKFFKDGRPLDLEGLKSCMRRGYAYIEGVEDLLTDLKNNGYEMHTSTNYPIWYEIIEEKLKLSSYLSWTFCSCTMGKRKPDPDFYMDMLKHLKVEPTCCVFIDDSRMKNVEAALHAGFNGIHFKTADSLRKDLSNLGIL
XP_057801742.1
MAAHTLVWRFSSFPVVKVEQRPPLTASPYSTNREKDMPLSHKSTTTTTTVAANDTTRKLPILLFDIMDTVVRDPFYHDIPAFFGMSMKELLECKHPTAWLEFEKGLINEVELAQKFFKDGRPLDLEGLKSCMRRGYAYIEGVEDLLTDLKNNGYEMHTSTNYPIWYEIIEEKLKLSSYLSWTFCSCTMGKRKPDPDFYMDMLKHLKVEPTCCVFIDDSRMKNVEAALHAGFNGIHFKTADSLRKDLSNLGIL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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