当前解析结果
SmilChr03G000013| 统一新 Gene ID | SmilChr03G000013 |
|---|---|
| 名称 | SmilChr03G000013 |
| 描述 | uncharacterized SmilChr03G000013 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 135859 - 140121 / + |
| NCBI Gene ID | LOC131016894 |
|---|---|
| GeneID | 131016894 |
| locus_tag | - |
| NCBI Name | LOC131016894 |
| 原始查询 | SmilChr03G000013 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:827585]; symbol=AT4G18530; hit=AT4G18530; species=arabidopsis; confidence=high |
| 产物 | lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:827585]; symbol=AT4G18530; hit=AT4G18530; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G18530 (AT4G18530)lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:827585] identity=56; qcov=0.948; evalue=4.89e-152; confidence=high |
| Rice | Os01g0919600- identity=58.7; qcov=0.833; evalue=1.84e-141; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF05212 (DUF707) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016894 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057801664.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057801664.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801664.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801664.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801664.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:137252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:137647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:137910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B68,B88,C34,C40 |
Chr3:137947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B15,C27,C8 |
Chr3:138865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B15,C10,C13,D1 |
Chr3:139859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B18,B31,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801664.1PF05212
DUF707 66-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801664.1 |
Pfam | PF05212 |
DUF707 | Family | 66 | 374 | 1.9e-142 | 474.6 | Protein of unknown function (DUF707) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。