当前解析结果
SmilChr03G000036| 统一新 Gene ID | SmilChr03G000036 |
|---|---|
| 名称 | SmilChr03G000036 |
| 描述 | probable WRKY transcription factor 26 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 446885 - 450947 / + |
| NCBI Gene ID | LOC131016863 |
|---|---|
| GeneID | 131016863 |
| locus_tag | - |
| NCBI Name | LOC131016863 |
| 原始查询 | SmilChr03G000036 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable WRKY transcription factor 26 |
| 产物 | probable WRKY transcription factor 26 |
| Arabidopsis | AT4G26440 (WRKY34)WRKY DNA-binding protein 34 [Source:NCBI gene (formerly Entrezgene);Acc:828750] identity=37.3; qcov=0.861; evalue=6.61e-76; confidence=medium |
| Rice | Os05g0343400 (WRKY53)- identity=42.5; qcov=0.661; evalue=1.2e-73; confidence=medium |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03106 (WRKY) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016863 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801624.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057801624.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057801624.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057801624.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057801624.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:447214 |
C |
CTG |
2bp_insertion | frameshift_variant | 63 | A10,A15,A3,A7,B108,B112,B114,B119,B121,B124,B14,B140,B2,B26,B27,B3,B32,B33,B34,B35,B38,B39,B40,B41,B42,B43,B48,B53,B56,B64,B78,B8,B80,B86,B89,B91,B93,B96,C11,C12,C13,C15,C16,C18,C23,C24,C36,C39,C40,C42,C52,C53,C54,C55,C59,C69,C74,C82,C83,D11,D2,D4,D6 |
Chr3:447314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A11,B23,D3 |
Chr3:447537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C74 |
Chr3:447570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B34,B39,C13,D6 |
Chr3:448420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B126,C33,C37 |
Chr3:448494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:448686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:448718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B69 |
Chr3:448727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B14,C11,C18,C69,C82 |
Chr3:449090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B73,C87 |
Chr3:449113 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B134,B29,B30 |
Chr3:449151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801624.1PF03106
WRKY 164-220 aa
PF03106
WRKY 303-359 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801624.1 |
Pfam | PF03106 |
WRKY | Domain | 164 | 220 | 1.4e-51 | 173.3 | WRKY DNA -binding domain |
XP_057801624.1 |
Pfam | PF03106 |
WRKY | Domain | 303 | 359 | 1.4e-51 | 173.3 | WRKY DNA -binding domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。