Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000037`

染色体: Chr03 坐标: 452039-457332 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000037`
名称	SmilChr03G000037
描述	coatomer subunit beta-1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	452039 - 457332 / `+`

ID 对照

NCBI Gene ID	`LOC131016799`
GeneID	`131016799`
locus_tag	`-`
NCBI Name	`LOC131016799`
原始查询	`SmilChr03G000037`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coatomer subunit beta-1-like
产物	coatomer subunit beta-1-like
Arabidopsis	`AT4G31480` (AT4G31480) Coatomer, beta subunit [Source:NCBI gene (formerly Entrezgene);Acc:829275] identity=82.6; qcov=1; evalue=0; confidence=high
Rice	`Os11g0174000` - identity=80; qcov=1; evalue=0; confidence=high
GO	GO:0005198 (structural molecule activity); GO:0005737 (cytoplasm); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006891 (intra-Golgi vesicle-mediated transport); GO:0030126 (COPI vesicle coat)
KEGG	-
Pfam	PF01602 (Adaptin_N); PF07718 (Coatamer_beta_C); PF14806 (Coatomer_b_Cpla)
InterPro	-
eggNOG	-
NR	GeneID:131016799

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057801523.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057801523.1`
3	Vesicle	囊泡	0.80000	`XP_057801523.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057801523.1`
5	Endocytic vesicle	Endocytic vesicle	0.20000	`XP_057801523.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:452994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,C35
`Chr3:453046`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B110,B21,B44,C17,C35
`Chr3:453136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C75,C8
`Chr3:453190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B18,B74,C14,C50,C79
`Chr3:453337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr3:453352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B2,B46,C11,C69
`Chr3:453436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:453523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B110,B21,B44,C17,C35
`Chr3:453579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr3:453653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:453691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:453904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801523.1

948 aa

474

948

Adaptin_N

Coatamer_beta_C

Coatomer_b_Cpla

PF01602 Adaptin_N 21-473 aa PF07718 Coatamer_beta_C 669-807 aa PF14806 Coatomer_b_Cpla 813-940 aa

XP_057801524.1

948 aa

474

948

Adaptin_N

Coatamer_beta_C

Coatomer_b_Cpla

PF01602 Adaptin_N 21-473 aa PF07718 Coatamer_beta_C 669-807 aa PF14806 Coatomer_b_Cpla 813-940 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801523.1`	Pfam	`PF01602`	Adaptin_N	Repeat	21	473	3.2e-89	300.6	Adaptin N terminal region
`XP_057801523.1`	Pfam	`PF07718`	Coatamer_beta_C	Domain	669	807	6.5e-57	192.0	Coatomer beta C-terminal region
`XP_057801523.1`	Pfam	`PF14806`	Coatomer_b_Cpla	Domain	813	940	3.5e-58	195.8	Coatomer beta subunit appendage platform
`XP_057801524.1`	Pfam	`PF01602`	Adaptin_N	Repeat	21	473	3.2e-89	300.6	Adaptin N terminal region
`XP_057801524.1`	Pfam	`PF07718`	Coatamer_beta_C	Domain	669	807	6.5e-57	192.0	Coatomer beta C-terminal region
`XP_057801524.1`	Pfam	`PF14806`	Coatomer_b_Cpla	Domain	813	940	3.5e-58	195.8	Coatomer beta subunit appendage platform

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945540.1
CGCAAATAGAAACGCGATGATGCACTAAAGAAAATAGAAACGAGAGAGAGAGAGAGAGAGATAGAGAGGAGAGAGAGAGAGAGAGAGTGCCGCAGATCTGAGAACTCAGCAGTGATTTGTGATTGCTCATTCCTTCTGAGCGAAAACCCCATTCGCCATCGCCCGTCTCCGATCCATTACTCGATAGCCAGTGCCAAATGGAGAAGACGTGTTCTTTGCTCGTACATTTTGACAAGGGCACCCCGGCCCTTGCGAATGAG...

XM_057945541.1
AAATAGAAACGCGATGATGCACTAAAGAAAATAGAAACGAGAGAGAGAGAGAGAGAGATAGAGAGGAGAGAGAGAGAGAGAGAGTGCCGCAGATCTGAGAACTCAGCAGTGATTTGTGATTGCTCATTCCTTCTGAGCGAAAACCCCATTCGCCATCGCCCGTCTCCGATCCATTACTCGATAGCCAGTGCCAAATGGAGAAGACGTGTTCTTTGCTCGTACATTTTGACAAGGGCACCCCGGCCCTTGCGAATGAGATC...

CDS

2 records

下载 CDS FASTA

LOC131016799
ATGGAGAAGACGTGTTCTTTGCTCGTACATTTTGACAAGGGCACCCCGGCCCTTGCGAATGAGATCAAGGAAGCACTTGAAGGGAATGATGTTCCAGCTAAGATTGATGCCATGAAAAATGCTATCATGCTTTTGCTAAATGGTGAAACCCTGCCTCAGCTTTTCATCACTATCGTGAGATATGTGTTACCCTCTGAAGACCACACCGTTCAGAAACTTCTCCTGCTTTATTTGGAAATCATTGACAAGACTGATGGAAA...

Protein

2 records

下载 Protein FASTA

XP_057801523.1
MEKTCSLLVHFDKGTPALANEIKEALEGNDVPAKIDAMKNAIMLLLNGETLPQLFITIVRYVLPSEDHTVQKLLLLYLEIIDKTDGKGRVLPEMILICQNLRNNLIHPNEYIRGVTLRFLCRLNEVDIIEPLIPSILANLEHRHPYVRRNAISAISSIYKLPNGEQFLVDAPETIEKFLLTEQDQSTKRNAFLMLFNCAQDRAINYLLTNVDRVSDWGELMQMVVLELIRKVCRTNKAEKGKYIKIIISLLNAPSAAVVY...

XP_057801524.1
MEKTCSLLVHFDKGTPALANEIKEALEGNDVPAKIDAMKNAIMLLLNGETLPQLFITIVRYVLPSEDHTVQKLLLLYLEIIDKTDGKGRVLPEMILICQNLRNNLIHPNEYIRGVTLRFLCRLNEVDIIEPLIPSILANLEHRHPYVRRNAISAISSIYKLPNGEQFLVDAPETIEKFLLTEQDQSTKRNAFLMLFNCAQDRAINYLLTNVDRVSDWGELMQMVVLELIRKVCRTNKAEKGKYIKIIISLLNAPSAAVVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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