Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000049`

染色体: Chr03 坐标: 504684-510432 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000049`
名称	SmilChr03G000049
描述	aspartic proteinase 36-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	504684 - 510432 / `-`

ID 对照

NCBI Gene ID	`LOC131016871`
GeneID	`131016871`
locus_tag	`-`
NCBI Name	`LOC131016871`
原始查询	`SmilChr03G000049`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aspartic proteinase 36-like
产物	aspartic proteinase 36-like
Arabidopsis	`AT1G05840` (AT1G05840) Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:837094] identity=59.7; qcov=0.955; evalue=0; confidence=high
Rice	`Os02g0473200` (OsAP19) - identity=57; qcov=0.991; evalue=0; confidence=high
GO	GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis)
KEGG	-
Pfam	PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N)
InterPro	-
eggNOG	-
NR	GeneID:131016871

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801632.1`
2	Cell wall	细胞壁	0.40000	`XP_057801633.1`
3	Vacuole	液泡	0.20000	`XP_057801633.1`
4	Nucleus	细胞核	0.00000	`XP_057801632.1`
5	Chromosome	染色体	0.00000	`XP_057801632.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:504838`	`ACT`	`A`	2bp_deletion	frameshift_variant	2	B9,C46
`Chr3:504838`	`ACT`	`A`	2bp_deletion	CDS_variant	2	B9,C46
`Chr3:504950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,B4
`Chr3:505373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr3:506173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:506387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,B91,B93,C33
`Chr3:506390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr3:507083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr3:507229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr3:507230`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B91,B93,C33
`Chr3:507857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr3:507935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801632.1

486 aa

243

486

TAXi_N

Asp

TAXi_C

PF14543 TAXi_N 80-263 aa PF00026 Asp 80-435 aa PF14541 TAXi_C 281-434 aa

XP_057801633.1

444 aa

222

444

TAXi_N

Asp

TAXi_C

PF14543 TAXi_N 38-221 aa PF00026 Asp 38-393 aa PF14541 TAXi_C 239-392 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801632.1`	Pfam	`PF14543`	TAXi_N	Domain	80	263	7.7e-42	144.2	Xylanase inhibitor N-terminal
`XP_057801632.1`	Pfam	`PF00026`	Asp	Domain	80	435	2.5e-30	106.7	Eukaryotic aspartyl protease
`XP_057801632.1`	Pfam	`PF14541`	TAXi_C	Domain	281	434	1.1e-22	81.2	Xylanase inhibitor C-terminal
`XP_057801633.1`	Pfam	`PF14543`	TAXi_N	Domain	38	221	6.4e-42	144.4	Xylanase inhibitor N-terminal
`XP_057801633.1`	Pfam	`PF00026`	Asp	Domain	38	393	1.9e-30	107.1	Eukaryotic aspartyl protease
`XP_057801633.1`	Pfam	`PF14541`	TAXi_C	Domain	239	392	9.7e-23	81.5	Xylanase inhibitor C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945649.1
TACTAGAAATAGTAGGTGTATTTACCTCAGAAAAAGGAAAAAGGGCAAAATAGGTGTAAGAATCTAAACAGTATTTCAACAAGAAAATAAATTGGAAAAGTTGGGCTGTTATTTTCCAAGGCTTGTGGTCTGACACAAGCAAGAATGTGAGTCGGAAATCAAAAATTCCAAAGAGCAGATAAATACATACATATAGATACACTTTAAGACCTCACTCTCTTGGAAGGTCCGTTTTCAGACACCACATTTTGCAGATGCTA...

XM_057945650.1
TGGGCTGTTATTTTCCAAGGCTTGTGGTCTGACACAAGCAAGAATGTGAGTCGGAAATCAAAAATTCCAAAGAGCAGATAAATACATACATATAGATACACTTTAAGACCTCACTCTCTTGGAAGGTCCGTTTTCAGACACCACATTTTGCAGATGCTAGAGAGAGAAACTGAATGCGGACACAGAGAGAGGCTGAGTTGATGTTGAATTGAACCCTTTAAATTGTTGGCGGCGGCAATGGATTCCGGGAAAAGTTCATC...

CDS

2 records

下载 CDS FASTA

LOC131016871
ATGGATTCCGGGAAAAGGTGCTTGCTTTTGTTTTCGGTTTTGTTGATTTTGGCAGAGGTGATGTGTGTGGTGATGGGCAATTTGGTGTTTGAAGTTCATCACAAGTATGGTGGCCGCGGCGAGGGAATGGCGGCGCTGGGGGCGCTGAGAGCGCACGACTCGCGCCGCCACGGCAGAATGCTTGCCGCCATTGATTTTCAGCTCGGCGGCGACGGCTCGCCCACTAGCGCTGCGCTCTATTACACCAAAATTACTATCGG...

LOC131016871
ATGGCGGCGCTGGGGGCGCTGAGAGCGCACGACTCGCGCCGCCACGGCAGAATGCTTGCCGCCATTGATTTTCAGCTCGGCGGCGACGGCTCGCCCACTAGCGCTGCGCTCTATTACACCAAAATTACTATCGGGTCTCCTCCAGTTGACTATCACGTCCAGGTAGATACAGGAAGTGATATTTTATGGGTGAATTGTCACAACTGCGACAGGTGTCCCACTAAAAGTGATCTCCATATAGAATTAAAACAGTATGACTT...

Protein

2 records

下载 Protein FASTA

XP_057801632.1
MDSGKRCLLLFSVLLILAEVMCVVMGNLVFEVHHKYGGRGEGMAALGALRAHDSRRHGRMLAAIDFQLGGDGSPTSAALYYTKITIGSPPVDYHVQVDTGSDILWVNCHNCDRCPTKSDLHIELKQYDLAASSSGKVITCDQDFCDAAFSSPNANCQAGMNCQYSVTYGDGSRTEGYFVRDNFRFDQVTGNLQTSSMNGSIAFGCSAKQSGELGSSSEAVDGIVGFGQANTSILSQLASANKVKKIFSHCLDGSKGGGIF...

XP_057801633.1
MAALGALRAHDSRRHGRMLAAIDFQLGGDGSPTSAALYYTKITIGSPPVDYHVQVDTGSDILWVNCHNCDRCPTKSDLHIELKQYDLAASSSGKVITCDQDFCDAAFSSPNANCQAGMNCQYSVTYGDGSRTEGYFVRDNFRFDQVTGNLQTSSMNGSIAFGCSAKQSGELGSSSEAVDGIVGFGQANTSILSQLASANKVKKIFSHCLDGSKGGGIFAIGEVVQPKVNTTPLVPNEPHYNVNLKSVEVGGQFLNLPTDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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