Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000053`

染色体: Chr03 坐标: 520754-524608 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000053`
名称	SmilChr03G000053
描述	biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	520754 - 524608 / `+`

ID 对照

NCBI Gene ID	`LOC131016926`
GeneID	`131016926`
locus_tag	`-`
NCBI Name	`LOC131016926`
原始查询	`SmilChr03G000053`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic-like
产物	biotin carboxyl carrier protein of acetyl-CoA carboxylase 1%2C chloroplastic-like
Arabidopsis	`AT5G16390` (CAC1) chloroplastic acetylcoenzyme A carboxylase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831500] identity=52.8; qcov=1.02; evalue=5.05e-82; confidence=high
Rice	`-` -
GO	GO:0003989 (acetyl-CoA carboxylase activity); GO:0006633 (fatty acid biosynthetic process); GO:0009317 (acetyl-CoA carboxylase complex)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00364 (Biotin_lipoyl)
InterPro	-
eggNOG	-
NR	GeneID:131016926

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057801712.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057801712.1`
3	Nucleus	细胞核	0.00000	`XP_057801712.1`
4	Chromosome	染色体	0.00000	`XP_057801712.1`
5	Centromere	着丝粒	0.00000	`XP_057801712.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:521150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:522057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:522063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr3:522205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr3:522233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,B5,C79
`Chr3:522483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C74
`Chr3:522653`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B75
`Chr3:522653`	`C`	`CA`	1bp_insertion	CDS_variant	1	B75
`Chr3:522655`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B75
`Chr3:522655`	`C`	`CA`	1bp_insertion	CDS_variant	1	B75
`Chr3:522657`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	1	B75
`Chr3:522657`	`C`	`CT`	1bp_insertion	CDS_variant	1	B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801712.1

316 aa

158

316

Biotin_lipoyl

PF00364 Biotin_lipoyl 211-257 aa

XP_057801713.1

285 aa

142

285

Biotin_lipoyl

PF00364 Biotin_lipoyl 211-283 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801712.1`	Pfam	`PF00364`	Biotin_lipoyl	Domain	211	257	1.8e-14	54.0	Biotin-requiring enzyme
`XP_057801713.1`	Pfam	`PF00364`	Biotin_lipoyl	Domain	211	283	1.5e-24	86.3	Biotin-requiring enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945730.1
ACACGTGTCGGTAACTGAAGACGAAGTCCACAAGTAGCTGCAGCTCAGGGGTACCTCATCTGCAGCGCGGTGTACAACCAGAATGTGGAAGGGCCGGCCCCACTTCACACTAGTTCGGATCACCATACCCCACCTTCCCCAAAACGACATCGTTTCATCTCTCACAGATACCGTACAGCTGTTATCTTCCACTCTTTGGTTTCATCGAGCGCAGCTTCTCTCTCACTCGGATCCCCAAACTCTCTCTCTCTCCCCCTCTC...

XM_057945729.1
GCGGTGTACAACCAGAATGTGGAAGGGCCGGCCCCACTTCACACTAGTTCGGATCACCATACCCCACCTTCCCCAAAACGACATCGTTTCATCTCTCACAGATACCGTACAGCTGTTATCTTCCACTCTTTGGTTTCATCGAGCGCAGCTTCTCTCTCACTCGGATCCCCAAACTCTCTCTCTCTCCCCCTCTCTCTCAGATACAGACAGTGTTGCTGTTCGGCGGGGCAATGGCAACGTCGTTTGGAGCAGCGACCGCG...

CDS

2 records

下载 CDS FASTA

LOC131016926
ATGGCAACGTCGTTTGGAGCAGCGACCGCGTCGGCGGCGGCTTCCGTGTCCGAGAATGCGCGAAAATCCTCCGCCTGTTTACCGCTCTGCCATCGCCATTCCTTCCTTCGCTCCAATTCGGTTTCCTTCCGCCTGACTCCCAGGCCGAAGCTCCGCTTCTCGTCCAAGAGTTTGCAGTCTGGCTGGAATTGTTCTCTAGTAAAAGCTCAACTGAATAAGGTTTCTGTCGATGGATCTGTAAAAGCTGCAGCCTCAACTTC...

Protein

2 records

下载 Protein FASTA

XP_057801712.1
MATSFGAATASAAASVSENARKSSACLPLCHRHSFLRSNSVSFRLTPRPKLRFSSKSLQSGWNCSLVKAQLNKVSVDGSVKAAASTSSQSEISAGAKDVVSEEPKQTVLASEESISEFVSQVASLVKLVDSKDIVELQLKQLDCEVLIRKKEALPPPPSPPMTYYQSQPQPAALPQVSAPSPVPAAAASTPPSAAPSPPKAQPSKSSHPPLKCPMAGTFYRSPAPGEPPFVKVGDKVKKGQVLCIIEAMKLMNEIEVSIS...

XP_057801713.1
MATSFGAATASAAASVSENARKSSACLPLCHRHSFLRSNSVSFRLTPRPKLRFSSKSLQSGWNCSLVKAQLNKVSVDGSVKAAASTSSQSEISAGAKDVVSEEPKQTVLASEESISEFVSQVASLVKLVDSKDIVELQLKQLDCEVLIRKKEALPPPPSPPMTYYQSQPQPAALPQVSAPSPVPAAAASTPPSAAPSPPKAQPSKSSHPPLKCPMAGTFYRSPAPGEPPFVKVGDKVKKGQVLCIIEAMKLMNEIEADQS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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