Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000057`

染色体: Chr03 坐标: 537228-672388 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000057`
名称	SmilChr03G000057
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	537228 - 672388 / `+`

ID 对照

NCBI Gene ID	`LOC131016788`
GeneID	`131016788`
locus_tag	`-`
NCBI Name	`LOC131016788`
原始查询	`SmilChr03G000057`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=26.8; qcov=1.03; evalue=2.9e-67; confidence=low
Rice	`Os07g0186500` - identity=31.8; qcov=0.781; evalue=1.41e-82; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016788

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801501.1`
2	Cytosol	细胞质基质	0.40000	`XP_057801500.1`
3	Cytoplasm	细胞质	0.20000	`XP_057801499.1`
4	Nucleus	细胞核	0.00000	`XP_057801499.1`
5	Chromosome	染色体	0.00000	`XP_057801499.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:537464`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr3:537504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr3:537520`	`T`	`TG`	1bp_insertion	frameshift_variant	2	B52,B97
`Chr3:537520`	`T`	`TG`	1bp_insertion	CDS_variant	2	B52,B97
`Chr3:537585`	`GA`	`G`	1bp_deletion	frameshift_variant	23	A4,B101,B111,B132,B20,B33,B42,B62,B72,B85,B95,B98,C1,C15,C23,C28,C34,C35,C37,C53,C55,C64,C66
`Chr3:537599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C87
`Chr3:537600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr3:537609`	`GA`	`G`	1bp_deletion	frameshift_variant	30	A4,B101,B132,B20,B33,B42,B44,B62,B63,B71,B72,B74,B85,B95,B98,C1,C15,C18,C21,C23,C24,C28,C3,C31,C34,C37,C53,C55,C64,C66
`Chr3:537635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B39,B4,C53
`Chr3:537637`	`T`	`TAG`	2bp_insertion	frameshift_variant	5	B133,B43,B56,C27,C87
`Chr3:537637`	`T`	`TAG`	2bp_insertion	CDS_variant	5	B133,B43,B56,C27,C87
`Chr3:537639`	`CGT`	`C`	2bp_deletion	frameshift_variant	5	B133,B43,B56,C27,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801499.1

1070 aa

535

1070

NB-ARC

WHD_DRP

PF00931 NB-ARC 353-520 aa PF23559 WHD_DRP 605-676 aa

XP_057801500.1

1054 aa

527

1054

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 346-509 aa PF23559 WHD_DRP 595-664 aa PF23598 LRR_14 718-981 aa

XP_057801501.1

905 aa

452

905

NB-ARC

WHD_DRP

PF00931 NB-ARC 188-355 aa PF23559 WHD_DRP 440-511 aa

XP_057801502.1

898 aa

449

898

NB-ARC

WHD_DRP

PF00931 NB-ARC 181-348 aa PF23559 WHD_DRP 433-504 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801499.1`	Pfam	`PF00931`	NB-ARC	Domain	353	520	1.1e-40	139.7	NB-ARC domain
`XP_057801499.1`	Pfam	`PF23559`	WHD_DRP	Domain	605	676	1.5e-16	60.9	Disease resistance protein Winged helix domain
`XP_057801500.1`	Pfam	`PF00931`	NB-ARC	Domain	346	509	9.2e-39	133.5	NB-ARC domain
`XP_057801500.1`	Pfam	`PF23559`	WHD_DRP	Domain	595	664	9.3e-17	61.6	Disease resistance protein Winged helix domain
`XP_057801500.1`	Pfam	`PF23598`	LRR_14	Repeat	718	981	9.3e-19	68.1	Leucine-rich repeat region
`XP_057801501.1`	Pfam	`PF00931`	NB-ARC	Domain	188	355	9.4e-41	140.0	NB-ARC domain
`XP_057801501.1`	Pfam	`PF23559`	WHD_DRP	Domain	440	511	1e-16	61.4	Disease resistance protein Winged helix domain
`XP_057801502.1`	Pfam	`PF00931`	NB-ARC	Domain	181	348	9.2e-41	140.0	NB-ARC domain
`XP_057801502.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	504	9.1e-17	61.6	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945517.1
GTAGGGCCAGCCGACACATCTTATCTTTACCTTAGCTGTTGGCAATTAATGTGATTGTGAAAGCTAGCCACATATTGTTTCTGATAATAATGGAGAAGATATAGCCATTGTTACTTTACACATTGTTTCTTTGCTGAACCTAACTAAGATTCTATCAAATTCTTGACCGAAATTCTCTGCAAAAATATACACTTGCTTTTCCTTCAACTGAGATTGATCATGGCGGCCTATGCAGCCTTGGTTTCTCTTATGCATATCAT...

XM_057945516.1
GGGCCAGCCGACACATCTTATCTTTACCTTAGCTGTTGGCAATTAATGTGATTGTGAAAGCTAGCCACATATTGTTTCTGATAATAATGGAGAAGATATAGCCATTGTTACTTTACACATTGTTTCTTTGCTGAACCTAACTAAGATTCTATCAAATTCTTGACCGAAATTCTCTGCAAAAATATACACTTGCTTTTCCTTCAACTGAGATTGATCATGGCGGCCTATGCAGCCTTGGTTTCTCTTATGCATATCATCGA...

CDS

4 records

下载 CDS FASTA

LOC131016788
ATGGCGGCCTATGCAGCCTTGGTTTCTCTTATGCATATCATCGATACAATCGAGCATCACCATTCCCCTCCAATTTCTATCCACAAACAACAAGTTGAATCTCTCACTCTAATTGTTACCTTTTTGCAGGAATTTCTTGAAAGTTATAAGTCCCCTGTTGCTGACGGAGATGAAGCTGATCCGCTGGAGATGCGTATCGCAGATGCAGCTTATGCGGCTGAAGATGTTATCGAATCACATATTGTGGACAAGCTTCAGCT...

Protein

4 records

下载 Protein FASTA

XP_057801499.1
MAAYAALVSLMHIIDTIEHHHSPPISIHKQQVESLTLIVTFLQEFLESYKSPVADGDEADPLEMRIADAAYAAEDVIESHIVDKLQLSRSKVAKIDTAYIAEDAVESHIVDKVQLRRSKEAKISCFFNCFGGSKNDSSNHDDEHINLYQDHGKKEAMETAAAADEGDVVGEDVSCIDFYEDLQQVIEEMNVIKKEAMETAAEAQLQRKEFLEGYKSPVADGDEADPLEMRIVDAAHAVEDVIESHIVNVIKLGRSSPNKE...

XP_057801500.1
MAAYAALVSLMHIIDTIEHHHSPPISIHKQQVESLTLIVTFLQEFLESYKSPVADGDEADPLEMRIADAAYAAEDVIESHIVDKLQLSRSKVAKIDTAYIAEDAVESHIVDKVQLRRSKEAKISCFFNCFGGSKNDSSNHDDEHINLYQDHGKKEAMETAAAADEGDVVGEDVSCIDFYEDLQQVIEEMNVIKKEAMETAAEAQLQRKEFLEGYKSPVADGDEADPLEMRIVDAAHAVEDVIESHIVNVIKLGRSSPNKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器