Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000059

染色体: Chr03 坐标: 624084-626617 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000059
名称SmilChr03G000059
描述uncharacterized SmilChr03G000059
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向624084 - 626617 / -

ID 对照

NCBI Gene IDLOC131016934
GeneID131016934
locus_tag-
NCBI NameLOC131016934
原始查询SmilChr03G000059

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述hit=Os08g0543000; species=rice; confidence=medium
产物hit=Os08g0543000; species=rice; confidence=medium
ArabidopsisAT2G40070 (AT2G40070)
flocculation FLO11-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818595]
identity=47.4; qcov=0.342; evalue=1.46e-15; confidence=low
RiceOs08g0543000
-
identity=40.6; qcov=0.581; evalue=7.58e-24; confidence=medium
GOGO:0043622 (cortical microtubule organization); GO:0055028 (cortical microtubule)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131016934

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057801725.1
2 Cytoskeleton 细胞骨架 1.00000 XP_057801725.1
3 Chromosome 染色体 0.00000 XP_057801725.1
4 Centromere 着丝粒 0.00000 XP_057801725.1
5 Chromatin 染色质 0.00000 XP_057801725.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:625273 C T EMS_canonical_SNV CDS_variant 3 B23,C24,C87
Chr3:625277 T TG 1bp_insertion frameshift_variant 1 C73
Chr3:625277 T TG 1bp_insertion CDS_variant 1 C73
Chr3:625415 C T EMS_canonical_SNV CDS_variant 4 B107,B122,C22,C26
Chr3:625473 C T EMS_canonical_SNV CDS_variant 1 B113
Chr3:625507 C T EMS_canonical_SNV CDS_variant 4 A4,C42,C45,C64
Chr3:625508 G A EMS_canonical_SNV CDS_variant 1 C13
Chr3:625575 C T EMS_canonical_SNV CDS_variant 3 B135,B5,C46
Chr3:625622 C T EMS_canonical_SNV CDS_variant 1 C13
Chr3:625643 AT A 1bp_deletion frameshift_variant 3 A22,C32,C68
Chr3:625643 AT A 1bp_deletion CDS_variant 3 A22,C32,C68
Chr3:625684 TA T 1bp_deletion frameshift_variant 17 A8,B111,B136,B2,B29,B3,B53,B62,B76,C20,C32,C45,C51,C55,C86,C87,D8

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057945742.1
CTCCGTATGTATCTTATAAAATGTTACGTTGGGTTAAAAGTTGACATAAGATGGTAAACTGAAGAAACGAGAGAGAGATGAAGAGAAGAGAAGCAGCAGGCGCAGGTTTTGACAAGGCAGGAAGGATTTCGAGTTGCTTCAAGGACATAGATGAGGAGCTTTCCTTTTTCCGCGAGCTTAAGAAGCGCGAAAAAGATCAATTTGGCAGCCTTCTTAACCCTATTTCTGATGACTTTGAAGCAAATGGAAGCTTTGGGCTG...
XM_057945743.1
CTCCGTATGTATCTTATAAAATGTTACGTTGGGTTAAAAGTTGACATAAGATGGTAAACTGAAGAAACGAGAGAGAGATGAAGAGAAGAGAAGCAGCAGGCGCAGGTTTTGACAAGGCAGGAAGGATTTCGAGTTGCTTCAAGGACATAGATGAGGAGCTTTCCTTTTTCCGCGAGCTTAAGAAGCGCGAAAAAGATCAATTTGGCAGCCTTCTTAACCCTATTTCTGATGACTTTGAAGCAAATGGAAGCTTTGGGCTG...

CDS

2 records

下载 CDS FASTA
LOC131016934
ATGAAGAGAAGAGAAGCAGCAGGCGCAGGTTTTGACAAGGCAGGAAGGATTTCGAGTTGCTTCAAGGACATAGATGAGGAGCTTTCCTTTTTCCGCGAGCTTAAGAAGCGCGAAAAAGATCAATTTGGCAGCCTTCTTAACCCTATTTCTGATGACTTTGAAGCAAATGGAAGCTTTGGGCTGAGCATAATGAATTCGGGAGGAAGAAAAGGGGCAGAATTCCTTGGTAAAAATGACTACAACTGGCTGAAAACGCCTCC...
LOC131016934
ATGAAGAGAAGAGAAGCAGCAGGCGCAGGTTTTGACAAGGCAGGAAGGATTTCGAGTTGCTTCAAGGACATAGATGAGGAGCTTTCCTTTTTCCGCGAGCTTAAGAAGCGCGAAAAAGATCAATTTGGCAGCCTTCTTAACCCTATTTCTGATGACTTTGAAGCAAATGGAAGCTTTGGGCTGAGCATAATGAATTCGGGAGGAAGAAAAGGGGCAGAATTCCTTGGTAAAAATGACTACAACTGGCTGAAAACGCCTCC...

Protein

2 records

下载 Protein FASTA
XP_057801725.1
MKRREAAGAGFDKAGRISSCFKDIDEELSFFRELKKREKDQFGSLLNPISDDFEANGSFGLSIMNSGGRKGAEFLGKNDYNWLKTPPATPLFPSLEMESNAQELVVQREIPIIQPISRQFIDKRNMKSAPLVTPKPNKIKSSVPKNFPNSNTSRNSTCLSARSSISNETPPNLRPSSATRGRPAYQNLPAPPKIMRRQPSNAGNVEKSGGVQVAGSRMVDKLMNARMSNADDRRSKIKLNGSCNGEEKRQPKIKLDASLN...
XP_057801726.1
MKRREAAGAGFDKAGRISSCFKDIDEELSFFRELKKREKDQFGSLLNPISDDFEANGSFGLSIMNSGGRKGAEFLGKNDYNWLKTPPATPLFPSLEMESNAQELVVQREIPIIQPISRFIDKRNMKSAPLVTPKPNKIKSSVPKNFPNSNTSRNSTCLSARSSISNETPPNLRPSSATRGRPAYQNLPAPPKIMRRQPSNAGNVEKSGGVQVAGSRMVDKLMNARMSNADDRRSKIKLNGSCNGEEKRQPKIKLDASLNE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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