Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000060`

染色体: Chr03 坐标: 669691-771622 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000060`
名称	SmilChr03G000060
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	669691 - 771622 / `+`

ID 对照

NCBI Gene ID	`LOC131016813`
GeneID	`131016813`
locus_tag	`-`
NCBI Name	`LOC131016813`
原始查询	`SmilChr03G000060`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT1G59780` (AT1G59780) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=27.9; qcov=0.999; evalue=1.77e-65; confidence=low
Rice	`Os07g0186500` - identity=29.1; qcov=0.922; evalue=2.37e-75; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016813

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801545.1`
2	Cytoplasm	细胞质	0.20000	`XP_057801542.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801545.1`
4	Nucleus	细胞核	0.00000	`XP_057801545.1`
5	Chromosome	染色体	0.00000	`XP_057801545.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:760612`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C29,C39,D7
`Chr3:760714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B78
`Chr3:760723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C43,D10
`Chr3:760737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B45
`Chr3:760761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B55,C31
`Chr3:760784`	`G`	`GGC`	2bp_insertion	frameshift_variant	1	C16
`Chr3:760784`	`G`	`GGC`	2bp_insertion	CDS_variant	1	C16
`Chr3:760787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr3:760791`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C16
`Chr3:760791`	`TC`	`T`	1bp_deletion	CDS_variant	1	C16
`Chr3:760799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B55,B65,C20,C31
`Chr3:760801`	`T`	`TG`	1bp_insertion	frameshift_variant	1	C16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801542.1

892 aa

446

892

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF00931 NB-ARC 181-344 aa PF13401 AAA_22 192-282 aa PF23559 WHD_DRP 429-499 aa PF23598 LRR_14 548-748 aa

XP_057801543.1

885 aa

442

885

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF00931 NB-ARC 174-337 aa PF13401 AAA_22 185-275 aa PF23559 WHD_DRP 422-492 aa PF23598 LRR_14 541-741 aa

XP_057801544.1

874 aa

437

874

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 181-343 aa PF23559 WHD_DRP 428-498 aa PF23598 LRR_14 551-747 aa

XP_057801545.1

760 aa

380

760

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF00931 NB-ARC 49-212 aa PF13401 AAA_22 60-150 aa PF23559 WHD_DRP 297-367 aa PF23598 LRR_14 416-616 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801542.1`	Pfam	`PF00931`	NB-ARC	Domain	181	344	2.5e-38	132.1	NB-ARC domain
`XP_057801542.1`	Pfam	`PF13401`	AAA_22	Domain	192	282	3.1e-07	31.5	AAA domain
`XP_057801542.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	499	7.4e-17	61.9	Disease resistance protein Winged helix domain
`XP_057801542.1`	Pfam	`PF23598`	LRR_14	Repeat	548	748	4.5e-22	79.0	Leucine-rich repeat region
`XP_057801543.1`	Pfam	`PF00931`	NB-ARC	Domain	174	337	2.5e-38	132.1	NB-ARC domain
`XP_057801543.1`	Pfam	`PF13401`	AAA_22	Domain	185	275	3e-07	31.5	AAA domain
`XP_057801543.1`	Pfam	`PF23559`	WHD_DRP	Domain	422	492	6.1e-17	62.1	Disease resistance protein Winged helix domain
`XP_057801543.1`	Pfam	`PF23598`	LRR_14	Repeat	541	741	4e-22	79.2	Leucine-rich repeat region
`XP_057801544.1`	Pfam	`PF00931`	NB-ARC	Domain	181	343	2.9e-38	131.9	NB-ARC domain
`XP_057801544.1`	Pfam	`PF23559`	WHD_DRP	Domain	428	498	2.4e-16	60.2	Disease resistance protein Winged helix domain
`XP_057801544.1`	Pfam	`PF23598`	LRR_14	Repeat	551	747	9.8e-21	74.6	Leucine-rich repeat region
`XP_057801545.1`	Pfam	`PF00931`	NB-ARC	Domain	49	212	2.1e-38	132.4	NB-ARC domain
`XP_057801545.1`	Pfam	`PF13401`	AAA_22	Domain	60	150	6.8e-07	30.4	AAA domain
`XP_057801545.1`	Pfam	`PF23559`	WHD_DRP	Domain	297	367	4.9e-17	62.4	Disease resistance protein Winged helix domain
`XP_057801545.1`	Pfam	`PF23598`	LRR_14	Repeat	416	616	2.9e-22	79.6	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945562.1
CTGACGGAGATGAAGCCGATCCTCTGGAGATGCGTATTGTAGATGCAGCTCATGCCGTTGAAGATGTTATCGAATCACATATTGTGAACGTGATTGAACTGGGAATTTCTCCAAGGCTATGTTGTAGATGCAGCTCATGCGGCTGAAGAAGTGAATTCTAGAGAGGAAGTCAGTTGCATCGACTTCTATGAAGATCTACAGCAAGTGATTGAAGAAATGAATGTGATCAAGAAGGAAGCCATGGAGACTTCACCTGAAGC...

XM_057945559.1
GATAATAATTGAGAAGAGGAGATATATATACCCATTTTACACATTGTTTTTGCTGAACCTAAACTCTGATTCTATCAAATTCTTTCTCAGAAAAATATACACTGTTTTTCCTTGGATCATGGCGGCATATGCAGCCTTGGTTTCTCTTATGCATATCATCGATACGATCGAACATCACCATTCCCCTCCAATTTCTATCGACAAACAACAAGTTAAATCTCTCACTCAAATTCTTAACTTTTTGCAGGAATTTCTTGAAA...

CDS

4 records

下载 CDS FASTA

LOC131016813
ATGGCGGCATATGCAGCCTTGGTTTCTCTTATGCATATCATCGATACGATCGAACATCACCATTCCCCTCCAATTTCTATCGACAAACAACAAGTTAAATCTCTCACTCAAATTCTTAACTTTTTGCAGGAATTTCTTGAAAGTTATAAGTCCCCTGTTGCCGATGGAGATGAAGCTGATCCGCTGGAGATGCGTATCGCAGATGCAGCTCATGCTGTTGAAGATGTTATCGAATCACATATTGTGAACGTGATTAAACT...

Protein

4 records

下载 Protein FASTA

XP_057801542.1
MAAYAALVSLMHIIDTIEHHHSPPISIDKQQVKSLTQILNFLQEFLESYKSPVADGDEADPLEMRIADAAHAVEDVIESHIVNVIKLVRSSPNEEFLQGYVVDAAHAAEEVNSREEVSCIDFYEDLQQVIEEMNVIKKEAMETSPEAQLQRKVSSTRAGSLTSSSTVKESMMVGFDDVQLQLLDRLTGGNRNRQIIPITGMGGIGKTTLARHIFEHALVKEYFDIRAWTTISQTYNVKETLRQVLHQVSGDLRSDLSEED...

XP_057801543.1
MAAYAALVSLMHIIDTIEHHHSPPISIDKQQVKSLTQILNFLQEFLESYKSPVADGDEADPLEMRIADAAHAVEDVIESHIVNVIKLEFLQGYVVDAAHAAEEVNSREEVSCIDFYEDLQQVIEEMNVIKKEAMETSPEAQLQRKVSSTRAGSLTSSSTVKESMMVGFDDVQLQLLDRLTGGNRNRQIIPITGMGGIGKTTLARHIFEHALVKEYFDIRAWTTISQTYNVKETLRQVLHQVSGDLRSDLSEEDLGVKLRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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