Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000064

染色体: Chr03 坐标: 725468-727022 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000064
名称SmilChr03G000064
描述uncharacterized SmilChr03G000064
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向725468 - 727022 / -

ID 对照

NCBI Gene IDLOC131016964
GeneID131016964
locus_tag-
NCBI NameLOC131016964
原始查询SmilChr03G000064

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述hit=Os08g0543000; species=rice; confidence=medium
产物hit=Os08g0543000; species=rice; confidence=medium
ArabidopsisAT2G40070 (AT2G40070)
flocculation FLO11-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818595]
identity=46.4; qcov=0.577; evalue=1.86e-15; confidence=low
RiceOs08g0543000
-
identity=41.6; qcov=0.887; evalue=1.63e-24; confidence=medium
GOGO:0043622 (cortical microtubule organization); GO:0055028 (cortical microtubule)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131016964

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057801794.1
2 Cytoplasm 细胞质 1.00000 XP_057801794.1
3 Cytoplasmic granule 细胞质颗粒 0.20000 XP_057801794.1
4 P-body P-body 0.20000 XP_057801794.1
5 Chromosome 染色体 0.00000 XP_057801794.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:726080 C T EMS_canonical_SNV CDS_variant 2 B124,B134
Chr3:726153 TG T 1bp_deletion frameshift_variant 19 A7,B1,B103,B106,B108,B109,B111,B136,B138,B16,B23,B33,B68,B80,B82,B97,C3,C63,C67
Chr3:726183 TG T 1bp_deletion frameshift_variant 1 B131
Chr3:726183 TG T 1bp_deletion CDS_variant 1 B131
Chr3:726184 G A EMS_canonical_SNV CDS_variant 2 B39,C66
Chr3:726187 G A EMS_canonical_SNV CDS_variant 5 B25,B43,B9,C19,D11
Chr3:726195 C T EMS_canonical_SNV CDS_variant 3 A16,B10,B31
Chr3:726223 A AT 1bp_insertion frameshift_variant 1 B133
Chr3:726223 A AT 1bp_insertion CDS_variant 1 B133
Chr3:726226 A AAC 2bp_insertion frameshift_variant 22 A18,A5,B1,B101,B106,B123,B28,B38,B39,B44,B47,B55,B62,B65,B66,B68,C14,C19,C43,C47,C53,C56
Chr3:726228 C T EMS_canonical_SNV CDS_variant 1 D9
Chr3:726230 G A EMS_canonical_SNV stop_gained 3 B128,B27,C38

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057945813.1
ACCAAAACACATTGTTAGCTCCGTATGTATCTTATAAAATGTTACGTTGGGTTAAAAGTTGACATAAGATGGTAAACTGAAGAAACGAGAGAGAGAGAGAGATGAAGAGAAGAGAAGCAGCAGGCGCAGGCTTTGACAAGGCAGGAAGGATTTCGAGTTGCTTCAAGGACATAGATGAGGAGCTTTCCTTTTTCCGCGAGCTTAAGAAGCGCGAAAAAGATCAATTTGGCAGCCTTCTTAACCCTATTTCTGATGACTTT...
XM_057945812.1
ACACATTGTTAGCTCCGTATGTATCTTATAAAATGTTACGTTGGGTTAAAAGTTGACATAAGATGGTAAACTGAAGAAACGAGAGAGAGAGAGAGATGAAGAGAAGAGAAGCAGCAGGCGCAGGCTTTGACAAGGCAGGAAGGATTTCGAGTTGCTTCAAGGACATAGATGAGGAGCTTTCCTTTTTCCGCGAGCTTAAGAAGCGCGAAAAAGATCAATTTGGCAGCCTTCTTAACCCTATTTCTGATGACTTTGAAGCA...

CDS

3 records

下载 CDS FASTA
LOC131016964
ATGAAGAGAAGAGAAGCAGCAGGCGCAGGCTTTGACAAGGCAGGAAGGATTTCGAGTTGCTTCAAGGACATAGATGAGGAGCTTTCCTTTTTCCGCGAGCTTAAGAAGCGCGAAAAAGATCAATTTGGCAGCCTTCTTAACCCTATTTCTGATGACTTTGAAGCAAATGTAAGCTTTGGGCTGAGCAGAATGAATTCGGGAGGAAGAAAAGGGGCAGAATTCCTTGGTAAAAATGACTACAACTGGCTGAAAACGCCTCC...
LOC131016964
ATGAAGAGAAGAGAAGCAGCAGGCGCAGGCTTTGACAAGGCAGGAAGGATTTCGAGTTGCTTCAAGGACATAGATGAGGAGCTTTCCTTTTTCCGCGAGCTTAAGAAGCGCGAAAAAGATCAATTTGGCAGCCTTCTTAACCCTATTTCTGATGACTTTGAAGCAAATGTAAGCTTTGGGCTGAGCAGAATGAATTCGGGAGGAAGAAAAGGGGCAGAATTCCTTGGTAAAAATGACTACAACTGGCTGAAAACGCCTCC...

Protein

3 records

下载 Protein FASTA
XP_057801794.1
MKRREAAGAGFDKAGRISSCFKDIDEELSFFRELKKREKDQFGSLLNPISDDFEANVSFGLSRMNSGGRKGAEFLGKNDYNWLKTPPATPLFPSLEMESNAQELVVQREIPIIQPISRQFIDKRNMKSAPLVTPKPNKIKSSVPKNFPNSNTSRNLRLDVFECQVINLE
XP_057801795.1
MKRREAAGAGFDKAGRISSCFKDIDEELSFFRELKKREKDQFGSLLNPISDDFEANVSFGLSRMNSGGRKGAEFLGKNDYNWLKTPPATPLFPSLEMESNAQELVVQREIPIIQPISRQFIDKRNMKSAPLVTPKPNKIKSSVPKNFPNSNTSRNLRLDVFECQVINLE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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