当前解析结果
SmilChr03G000065| 统一新 Gene ID | SmilChr03G000065 |
|---|---|
| 名称 | SmilChr03G000065 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 729531 - 824790 / + |
| NCBI Gene ID | LOC131016824 |
|---|---|
| GeneID | 131016824 |
| locus_tag | - |
| NCBI Name | LOC131016824 |
| 原始查询 | SmilChr03G000065 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.3; qcov=1.03; evalue=2.98e-65; confidence=low |
| Rice | Os07g0186500- identity=30.4; qcov=0.804; evalue=1.71e-79; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016824 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057801564.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057801564.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057801564.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801564.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801564.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:729775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B44 |
Chr3:729899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr3:729912 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B43,C41 |
Chr3:729924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B78,C40 |
Chr3:729934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B65,C20 |
Chr3:729935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B24,B54,B77,C58 |
Chr3:729938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B7,B94,C28 |
Chr3:729952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B43,B54,C41,D2 |
Chr3:729953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,D2 |
Chr3:729968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B94 |
Chr3:729992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B6,C17,C31 |
Chr3:730155 |
CTA |
C |
2bp_deletion | frameshift_variant | 7 | A2,B131,B137,C19,C26,C3,C56 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801564.1PF00931
NB-ARC 183-346 aa
PF23559
WHD_DRP 431-501 aa
PF23598
LRR_14 554-752 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801564.1 |
Pfam | PF00931 |
NB-ARC | Domain | 183 | 346 | 1.4e-40 | 139.4 | NB-ARC domain |
XP_057801564.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 431 | 501 | 1.1e-14 | 54.9 | Disease resistance protein Winged helix domain |
XP_057801564.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 554 | 752 | 1e-21 | 77.8 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。