Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000089`

染色体: Chr03 坐标: 1013781-1017093 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000089`
名称	SmilChr03G000089
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1013781 - 1017093 / `+`

ID 对照

NCBI Gene ID	`LOC131015737`
GeneID	`131015737`
locus_tag	`-`
NCBI Name	`LOC131015737`
原始查询	`SmilChr03G000089`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT3G46530` (RPP13) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=29.8; qcov=0.765; evalue=2.89e-69; confidence=low
Rice	`Os10g0183000` (OsLSR) - identity=29.6; qcov=0.828; evalue=3.05e-70; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131015737

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057800141.1`
2	Cytosol	细胞质基质	0.40000	`XP_057800141.1`
3	Cell membrane	细胞膜	0.40000	`XP_057800141.1`
4	Nucleus	细胞核	0.00000	`XP_057800141.1`
5	Chromosome	染色体	0.00000	`XP_057800141.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1014241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr3:1014251`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B16,B54,C33
`Chr3:1014326`	`A`	`AAC`	2bp_insertion	frameshift_variant	3	A3,C27,C51
`Chr3:1014326`	`A`	`AAC`	2bp_insertion	CDS_variant	3	A3,C27,C51
`Chr3:1014519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B97,C51
`Chr3:1014520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr3:1014580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr3:1014589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B41,B42,B43
`Chr3:1014605`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B121,B36,B86
`Chr3:1014605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B121,B36,B86
`Chr3:1014615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr3:1014625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C37,C56,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800141.1

903 aa

452

903

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 210-377 aa PF23559 WHD_DRP 453-523 aa PF23598 LRR_14 580-772 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800141.1`	Pfam	`PF00931`	NB-ARC	Domain	210	377	6.4e-42	143.8	NB-ARC domain
`XP_057800141.1`	Pfam	`PF23559`	WHD_DRP	Domain	453	523	3.3e-19	69.4	Disease resistance protein Winged helix domain
`XP_057800141.1`	Pfam	`PF23598`	LRR_14	Repeat	580	772	1.6e-19	70.6	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944158.1
ATGGTGGAGAAAGAGTCAAGAATGTTTCAATTGAGGGGCCCGCGGAAGGAGTCTGTCGTTGGACTGGCCAATTCTAATTACACTGAGCTGACACAGTTATATCAGAAATACAAGGATCAAGAAAAGGAAGCAATTAGGGAGGCAGTAAATATAACACAAGAGATTATTGAGTATATTTTCTCCCCAGAAAATGTCTCAGATTGTGGGACGATAGAGGCGAGTGTGAGACTTTCAAATCAGTTGGGGGAATTGGCAGAGAA...

CDS

1 records

下载 CDS FASTA

LOC131015737
ATGGTGGAGAAAGAGTCAAGAATGTTTCAATTGAGGGGCCCGCGGAAGGAGTCTGTCGTTGGACTGGCCAATTCTAATTACACTGAGCTGACACAGTTATATCAGAAATACAAGGATCAAGAAAAGGAAGCAATTAGGGAGGCAGTAAATATAACACAAGAGATTATTGAGTATATTTTCTCCCCAGAAAATGTCTCAGATTGTGGGACGATAGAGGCGAGTGTGAGACTTTCAAATCAGTTGGGGGAATTGGCAGAGAA...

Protein

1 records

下载 Protein FASTA

XP_057800141.1
MVEKESRMFQLRGPRKESVVGLANSNYTELTQLYQKYKDQEKEAIREAVNITQEIIEYIFSPENVSDCGTIEASVRLSNQLGELAEKLASTAGDVVDYCKSPDELVNNVRRRSDSSSRSAIRLDVSLLCLLARVKRIMLTTASSTRSALKSEDDGFHEDLTVATQLAVNISNRLGRLAERIKWTAVGSSSRSSPTRKDVVVGFDEDRLQILSRLRSYSSELQVLPIVGMGGIGKSTLAKIVYDDTFITYHFDFHAWVTIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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