Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000093`

染色体: Chr03 坐标: 1036298-1042865 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000093`
名称	SmilChr03G000093
描述	clavaminate synthase-like protein At3g21360
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1036298 - 1042865 / `-`

ID 对照

NCBI Gene ID	`LOC131016938`
GeneID	`131016938`
locus_tag	`-`
NCBI Name	`LOC131016938`
原始查询	`SmilChr03G000093`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	clavaminate synthase-like protein At3g21360
产物	clavaminate synthase-like protein At3g21360
Arabidopsis	`AT3G21360` (AT3G21360) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821690] identity=42.1; qcov=0.967; evalue=2.19e-84; confidence=medium
Rice	`Os08g0383800` (B1090H08.29) - identity=73.8; qcov=0.985; evalue=3.49e-173; confidence=high
GO	GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF02668 (TauD)
InterPro	-
eggNOG	-
NR	GeneID:131016938

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057801732.1`
2	Cytoplasm	细胞质	0.80000	`XP_057801732.1`
3	Nucleus	细胞核	0.00000	`XP_057801732.1`
4	Chromosome	染色体	0.00000	`XP_057801732.1`
5	Centromere	着丝粒	0.00000	`XP_057801732.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1036389`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr3:1036406`	`CT`	`C`	1bp_deletion	frameshift_variant	4	B39,B40,B55,C31
`Chr3:1036406`	`CT`	`C`	1bp_deletion	CDS_variant	4	B39,B40,B55,C31
`Chr3:1036435`	`C`	`CCA`	2bp_insertion	frameshift_variant	1	A11
`Chr3:1036435`	`C`	`CCA`	2bp_insertion	CDS_variant	1	A11
`Chr3:1036448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B124,B129,C41,C7,C84
`Chr3:1036466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr3:1036502`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr3:1036525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C41,C84
`Chr3:1040357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B37,C45
`Chr3:1040409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C1,C13,C56,C67
`Chr3:1040421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B39,C31,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801732.1

275 aa

138

275

TauD

PF02668 TauD 48-185 aa

XP_057801733.1

329 aa

164

329

TauD

PF02668 TauD 48-324 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801732.1`	Pfam	`PF02668`	TauD	Domain	48	185	1.8e-18	68.1	Taurine catabolism dioxygenase TauD, TfdA family
`XP_057801733.1`	Pfam	`PF02668`	TauD	Domain	48	324	8.6e-32	111.8	Taurine catabolism dioxygenase TauD, TfdA family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945750.1
TTACTAAATAAACAATTAAATCTTTTTCAAATCATACAGCTCTCCCTTAAAACCTATTTTCATGGAGGGATGGAGTATTTATGTTATTGAAGAAATGTCTATAACTATAATATTTTGCAGAAGATTTCAAACAATATAAAATGCAAAGCGATGTGTAGAACTACTTAGTAGAATAATTATCCTATTGAAAAAGCCAAAATAATCGTCAACCCAGCTGCTTTATTTATTACTATTATACTCTCTCCCTCCGTCCCATAATA...

XM_057945749.1
AATAAACAATTAAATCTTTTTCAAATCATACAGCTCTCCCTTAAAACCTATTTTCATGGAGGGATGGAGTATTTATGTTATTGAAGAAATGTCTATAACTATAATATTTTGCAGAAGATTTCAAACAATATAAAATGCAAAGCGATGTGTAGAACTACTTAGTAGAATAATTATCCTATTGAAAAAGCCAAAATAATCGTCAACCCAGCTGCTTTATTTATTACTATTATACTCTCTCCCTCCGTCCCATAATAAGTATT...

CDS

2 records

下载 CDS FASTA

LOC131016938
ATGCTGATGGAGATGAGCTGCAAATACTTCAAGGTAGGAAGGTGCGAAGGGCAGAAGGTGGTGGACGGCGAAGCTGTGCCGCTAGTGCTGCAGCCCCCGGAGGGCGGCGGAGGCGAGGTGGAGGGGCTGCTGTGGGCCATAAGGGAGAACAAGGAGTGGTTCGAGAAGACGATAGTGAAAAACAGTGCCGTCCTCCTCCGAGGCTTCCACGTCAAGAATGCCCAAGAGTTCAACGACATAGTCGAGGCCTTCGGGTGGGA...

Protein

2 records

下载 Protein FASTA

XP_057801732.1
MLMEMSCKYFKVGRCEGQKVVDGEAVPLVLQPPEGGGGEVEGLLWAIRENKEWFEKTIVKNSAVLLRGFHVKNAQEFNDIVEAFGWEDIRYVGPAPRTHVYKRVWTANEGPLSEFIYYHHEMVLIKEFPEKVILFCEVPPPEGGETPIVPSFRVTERMLEEYPEMVEEMERKGLRYTFTALSKNDTSSMRGRGWEDAFGTSDRVEAEKRGKALGMEMEWLAEGGVKTILGPRPLTRVFEGRKGRRMWFNTVVGMHGNELS...

XP_057801733.1
MLMEMSCKYFKVGRCEGQKVVDGEAVPLVLQPPEGGGGEVEGLLWAIRENKEWFEKTIVKNSAVLLRGFHVKNAQEFNDIVEAFGWEDIRYVGPAPRTHVYKRVWTANEGPLSEFIYYHHEMVLIKEFPEKVILFCEVPPPEGGETPIVPSFRVTERMLEEYPEMVEEMERKGLRYTFTALSKNDTSSMRGRGWEDAFGTSDRVEAEKRGKALGMEMEWLAEGGVKTILGPRPLTRVFEGRKGRRMWFNTVVGMHGNELS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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