Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000094`

染色体: Chr03 坐标: 1041581-1052957 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000094`
名称	SmilChr03G000094
描述	putative late blight resistance protein homolog R1B-16
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1041581 - 1052957 / `-`

ID 对照

NCBI Gene ID	`LOC131016830`
GeneID	`131016830`
locus_tag	`-`
NCBI Name	`LOC131016830`
原始查询	`SmilChr03G000094`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-16
产物	putative late blight resistance protein homolog R1B-16
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=28.9; qcov=1.04; evalue=1.88e-78; confidence=low
Rice	`Os08g0424700` (P0456B03.103) - identity=29.4; qcov=0.985; evalue=5.93e-85; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016830

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801574.1`
2	Nucleus	细胞核	0.00000	`XP_057801574.1`
3	Chromosome	染色体	0.00000	`XP_057801574.1`
4	Centromere	着丝粒	0.00000	`XP_057801574.1`
5	Chromatin	染色质	0.00000	`XP_057801574.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1050056`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	A19,B69,C45,D10
`Chr3:1050056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B69,C45,D10
`Chr3:1050093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr3:1050108`	`G`	`A`	EMS_canonical_SNV	stop_gained	6	B24,B28,B90,C50,C62,C71
`Chr3:1050112`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B80
`Chr3:1050112`	`T`	`TC`	1bp_insertion	CDS_variant	1	B80
`Chr3:1050135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B14,B84,C84
`Chr3:1050136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B132
`Chr3:1050153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B30,C21,C47
`Chr3:1050171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr3:1050175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,B38,C56
`Chr3:1050190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801574.1

858 aa

429

858

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 158-329 aa PF23559 WHD_DRP 411-483 aa PF23598 LRR_14 538-731 aa

XP_057801575.1

858 aa

429

858

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 158-329 aa PF23559 WHD_DRP 411-483 aa PF23598 LRR_14 538-731 aa

XP_057801576.1

858 aa

429

858

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 158-329 aa PF23559 WHD_DRP 411-483 aa PF23598 LRR_14 538-731 aa

XP_057801578.1

858 aa

429

858

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 158-329 aa PF23559 WHD_DRP 411-483 aa PF23598 LRR_14 538-731 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801574.1`	Pfam	`PF00931`	NB-ARC	Domain	158	329	3.7e-41	141.3	NB-ARC domain
`XP_057801574.1`	Pfam	`PF23559`	WHD_DRP	Domain	411	483	5.6e-18	65.5	Disease resistance protein Winged helix domain
`XP_057801574.1`	Pfam	`PF23598`	LRR_14	Repeat	538	731	3.6e-25	89.2	Leucine-rich repeat region
`XP_057801575.1`	Pfam	`PF00931`	NB-ARC	Domain	158	329	3.7e-41	141.3	NB-ARC domain
`XP_057801575.1`	Pfam	`PF23559`	WHD_DRP	Domain	411	483	5.6e-18	65.5	Disease resistance protein Winged helix domain
`XP_057801575.1`	Pfam	`PF23598`	LRR_14	Repeat	538	731	3.6e-25	89.2	Leucine-rich repeat region
`XP_057801576.1`	Pfam	`PF00931`	NB-ARC	Domain	158	329	3.7e-41	141.3	NB-ARC domain
`XP_057801576.1`	Pfam	`PF23559`	WHD_DRP	Domain	411	483	5.6e-18	65.5	Disease resistance protein Winged helix domain
`XP_057801576.1`	Pfam	`PF23598`	LRR_14	Repeat	538	731	3.6e-25	89.2	Leucine-rich repeat region
`XP_057801578.1`	Pfam	`PF00931`	NB-ARC	Domain	158	329	3.7e-41	141.3	NB-ARC domain
`XP_057801578.1`	Pfam	`PF23559`	WHD_DRP	Domain	411	483	5.6e-18	65.5	Disease resistance protein Winged helix domain
`XP_057801578.1`	Pfam	`PF23598`	LRR_14	Repeat	538	731	3.6e-25	89.2	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945595.1
GCGGCGCGTCGGCTTGAAGCATATGATTGAGGGCCCGCAGAAATGCCTTTCCAAGGGAGACTTTGTCATTTCGTCCTCCACTTGCAAAAATAAAGTAGACAATCCATTGGCTTTATTGTAAAAGGAAAACATATGGTTGGTCAATAATGAATAATTTATCTCTCAGTCTTCTAAACTAGCCTGCTCTCTTCCAGCCATTCTTCCAGCTTAGTTTATCTTTATCTGCAAAAATCTAGTAGCAAAAACTTAACTGTGATCAC...

XM_057945593.1
GCGGCGCGTCGGCTTGAAGCATATGATTGAGGGCCCGCAGAAATGCCTTTCCAAGGGAGACTTTGTCATTTCGTCCTCCACTTGCAAAAATAAAGTAGACAATCCATTGGCTTTATTGTAAAAGGAAAACATATGGTTGGTCAATAATGAATAATTTATCTCTCAGTCTTCTAAACTAGCCTGCTCTCTTCCAGCCATTCTTCCAGCTTAGTTTATCTTTATCTGCAAAAATCTAGTAGCAAAAACTTAACTGTGATCAC...

CDS

4 records

下载 CDS FASTA

LOC131016830
ATGGCTTATGCTGCTCTTCTTTCCCTCGCCCGAACCACTGGAGAAATAATCTTGGATCAAGATAGATATTCCATTCCTTGTAATAAAAAACAACAAATTCGATCTATCTATGAACCATTTATTTTCTTGCAAGAGTTTCTTGAAGATTTTCCCGAGAAAGCCAACATCTTGGATGGGCAAATCAGAGATTTAGCATATGAAGCAGAGCATATTATTGAGTCTTTCATATTGATGGAAGCTCGATCACATTGGTGGAATGT...

Protein

4 records

下载 Protein FASTA

XP_057801574.1
MAYAALLSLARTTGEIILDQDRYSIPCNKKQQIRSIYEPFIFLQEFLEDFPEKANILDGQIRDLAYEAEHIIESFILMEARSHWWNVLAVKSKLKWQIRRIRKETNSITREVMIIKNNSADTVQLGASSSAAAGSPSRSAPIIKIGYMVGLHEDLLTIKSRLCGESPNLEVIPIVGMGGIGKTTLAKCVYDDPLTVQRFDIRVWVTVSQDYNADVVLSALLASMEEFDKDRSEESKDRSKEEKELPGAKVHKILKGRRYL...

XP_057801575.1
MAYAALLSLARTTGEIILDQDRYSIPCNKKQQIRSIYEPFIFLQEFLEDFPEKANILDGQIRDLAYEAEHIIESFILMEARSHWWNVLAVKSKLKWQIRRIRKETNSITREVMIIKNNSADTVQLGASSSAAAGSPSRSAPIIKIGYMVGLHEDLLTIKSRLCGESPNLEVIPIVGMGGIGKTTLAKCVYDDPLTVQRFDIRVWVTVSQDYNADVVLSALLASMEEFDKDRSEESKDRSKEEKELPGAKVHKILKGRRYL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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