Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000102`

染色体: Chr03 坐标: 1136578-1142278 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000102`
名称	SmilChr03G000102
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1136578 - 1142278 / `+`

ID 对照

NCBI Gene ID	`LOC131016819`
GeneID	`131016819`
locus_tag	`-`
NCBI Name	`LOC131016819`
原始查询	`SmilChr03G000102`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G48620` (AT5G48620) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=27.8; qcov=1.01; evalue=4.54e-84; confidence=low
Rice	`Os06g0158300` (KMK0024M20.32) - identity=29.1; qcov=0.755; evalue=5.42e-74; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016819

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801553.1`
2	Nucleus	细胞核	0.00000	`XP_057801553.1`
3	Chromosome	染色体	0.00000	`XP_057801553.1`
4	Centromere	着丝粒	0.00000	`XP_057801553.1`
5	Chromatin	染色质	0.00000	`XP_057801553.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1136634`	`GA`	`G`	1bp_deletion	frameshift_variant	1	D6
`Chr3:1136634`	`GA`	`G`	1bp_deletion	CDS_variant	1	D6
`Chr3:1136655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B58,C46
`Chr3:1136680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr3:1136694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr3:1136702`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr3:1136711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr3:1136813`	`CG`	`C`	1bp_deletion	frameshift_variant	5	B114,B25,B69,C41,C84
`Chr3:1136813`	`CG`	`C`	1bp_deletion	CDS_variant	5	B114,B25,B69,C41,C84
`Chr3:1137122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B30,B83,B85
`Chr3:1137139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:1137150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801553.1

883 aa

442

883

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-87 aa PF00931 NB-ARC 161-324 aa PF23559 WHD_DRP 407-477 aa PF23598 LRR_14 533-813 aa

XP_057801554.1

883 aa

442

883

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-87 aa PF00931 NB-ARC 161-324 aa PF23559 WHD_DRP 407-477 aa PF23598 LRR_14 533-813 aa

XP_057801555.1

883 aa

442

883

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-87 aa PF00931 NB-ARC 161-324 aa PF23559 WHD_DRP 407-477 aa PF23598 LRR_14 533-813 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801553.1`	Pfam	`PF18052`	Rx_N	Domain	5	87	3.7e-17	62.9	Rx N-terminal domain
`XP_057801553.1`	Pfam	`PF00931`	NB-ARC	Domain	161	324	4.8e-41	140.9	NB-ARC domain
`XP_057801553.1`	Pfam	`PF23559`	WHD_DRP	Domain	407	477	2.6e-20	72.9	Disease resistance protein Winged helix domain
`XP_057801553.1`	Pfam	`PF23598`	LRR_14	Repeat	533	813	1.9e-18	67.1	Leucine-rich repeat region
`XP_057801554.1`	Pfam	`PF18052`	Rx_N	Domain	5	87	3.7e-17	62.9	Rx N-terminal domain
`XP_057801554.1`	Pfam	`PF00931`	NB-ARC	Domain	161	324	4.8e-41	140.9	NB-ARC domain
`XP_057801554.1`	Pfam	`PF23559`	WHD_DRP	Domain	407	477	2.6e-20	72.9	Disease resistance protein Winged helix domain
`XP_057801554.1`	Pfam	`PF23598`	LRR_14	Repeat	533	813	1.9e-18	67.1	Leucine-rich repeat region
`XP_057801555.1`	Pfam	`PF18052`	Rx_N	Domain	5	87	3.7e-17	62.9	Rx N-terminal domain
`XP_057801555.1`	Pfam	`PF00931`	NB-ARC	Domain	161	324	4.8e-41	140.9	NB-ARC domain
`XP_057801555.1`	Pfam	`PF23559`	WHD_DRP	Domain	407	477	2.6e-20	72.9	Disease resistance protein Winged helix domain
`XP_057801555.1`	Pfam	`PF23598`	LRR_14	Repeat	533	813	1.9e-18	67.1	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057945571.1
TGAAGGTAGCATAGCATAGTGGGAAAATGGCGGAGGCAGCAGTGACATTCCTACTGGATAACGTGCAGAAGCTGCTGGTGGAGCAGATGCATCTGATATCGGGGGCGGAGAAGGAGCTGAAGCAGTTGCAGATCGAGCTGGAGTTGATGAACGCCTTCTTGATGGAGTATGCCGACAAGCGGGAGAAGGGTCGGGTCTTCATACAGTTCGAGAGGCAGATCAGGGAGGCCGTCTACGAGGCCGAGGACATCCTCGACGCC...

XM_057945572.1
TGAAGGTAGCATAGCATAGTGGGAAAATGGCGGAGGCAGCAGTGACATTCCTACTGGATAACGTGCAGAAGCTGCTGGTGGAGCAGATGCATCTGATATCGGGGGCGGAGAAGGAGCTGAAGCAGTTGCAGATCGAGCTGGAGTTGATGAACGCCTTCTTGATGGAGTATGCCGACAAGCGGGAGAAGGGTCGGGTCTTCATACAGTTCGAGAGGCAGATCAGGGAGGCCGTCTACGAGGCCGAGGACATCCTCGACGCC...

CDS

3 records

下载 CDS FASTA

LOC131016819
ATGGCGGAGGCAGCAGTGACATTCCTACTGGATAACGTGCAGAAGCTGCTGGTGGAGCAGATGCATCTGATATCGGGGGCGGAGAAGGAGCTGAAGCAGTTGCAGATCGAGCTGGAGTTGATGAACGCCTTCTTGATGGAGTATGCCGACAAGCGGGAGAAGGGTCGGGTCTTCATACAGTTCGAGAGGCAGATCAGGGAGGCCGTCTACGAGGCCGAGGACATCCTCGACGCCTGCCTCACCCAAAAGGCCCAATCCGG...

Protein

3 records

下载 Protein FASTA

XP_057801553.1
MAEAAVTFLLDNVQKLLVEQMHLISGAEKELKQLQIELELMNAFLMEYADKREKGRVFIQFERQIREAVYEAEDILDACLTQKAQSGATTIRNFMHLHDLAEKVNELRLQLQPIFDRAIKGLNALPIAHPSAATPDDNKFKKTQLLREDNVVGFADEEATLMKYLKEKTEQLDVISIVGMPGLGKTTLAWKIYRDPKIQFEFPTLIWVYVSQELNVREVFLTILKHFTRNDMSGKGEWELTQLVRSHLDKGRFLLFMDDV...

XP_057801554.1
MAEAAVTFLLDNVQKLLVEQMHLISGAEKELKQLQIELELMNAFLMEYADKREKGRVFIQFERQIREAVYEAEDILDACLTQKAQSGATTIRNFMHLHDLAEKVNELRLQLQPIFDRAIKGLNALPIAHPSAATPDDNKFKKTQLLREDNVVGFADEEATLMKYLKEKTEQLDVISIVGMPGLGKTTLAWKIYRDPKIQFEFPTLIWVYVSQELNVREVFLTILKHFTRNDMSGKGEWELTQLVRSHLDKGRFLLFMDDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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