当前解析结果
SmilChr03G000103| 统一新 Gene ID | SmilChr03G000103 |
|---|---|
| 名称 | SmilChr03G000103 |
| 描述 | uncharacterized SmilChr03G000103 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1147018 - 1154474 / + |
| NCBI Gene ID | LOC131016981 |
|---|---|
| GeneID | 131016981 |
| locus_tag | - |
| NCBI Name | LOC131016981 |
| 原始查询 | SmilChr03G000103 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribosomal protein S5 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842796]; symbol=AT1G64880; hit=AT1G64880; species=arabidopsis; confidence=high |
| 产物 | Ribosomal protein S5 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842796]; symbol=AT1G64880; hit=AT1G64880; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G64880 (AT1G64880)Ribosomal protein S5 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842796] identity=74; qcov=1; evalue=3.05e-60; confidence=high |
| Rice | Os02g0102400- identity=68.3; qcov=1.01; evalue=2.83e-56; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation) |
| KEGG | - |
| Pfam | PF00333 (Ribosomal_S5); PF03719 (Ribosomal_S5_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016981 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057801821.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057801821.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057801821.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801821.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801821.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1147106 |
AGC |
A |
2bp_deletion | frameshift_variant | 3 | B109,B3,B96 |
Chr3:1147106 |
AGC |
A |
2bp_deletion | CDS_variant | 3 | B109,B3,B96 |
Chr3:1147110 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B109,B3,B96 |
Chr3:1147110 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B109,B3,B96 |
Chr3:1147121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B74,C39 |
Chr3:1147133 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B109,B3,B96 |
Chr3:1147133 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B109,B3,B96 |
Chr3:1147141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B136,B61,D10 |
Chr3:1147165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:1147176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr3:1147654 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B9 |
Chr3:1147654 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801821.1PF00333
Ribosomal_S5 2-40 aa
PF03719
Ribosomal_S5_C 55-119 aa
XP_057801822.1PF00333
Ribosomal_S5 2-40 aa
PF03719
Ribosomal_S5_C 55-119 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801821.1 |
Pfam | PF00333 |
Ribosomal_S5 | Domain | 2 | 40 | 8.2e-10 | 39.3 | Ribosomal protein S5, N-terminal domain |
XP_057801821.1 |
Pfam | PF03719 |
Ribosomal_S5_C | Domain | 55 | 119 | 2.1e-20 | 72.7 | Ribosomal protein S5, C-terminal domain |
XP_057801822.1 |
Pfam | PF00333 |
Ribosomal_S5 | Domain | 2 | 40 | 8.2e-10 | 39.3 | Ribosomal protein S5, N-terminal domain |
XP_057801822.1 |
Pfam | PF03719 |
Ribosomal_S5_C | Domain | 55 | 119 | 2.1e-20 | 72.7 | Ribosomal protein S5, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。