Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000105`

染色体: Chr03 坐标: 1172058-1175844 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000105`
名称	SmilChr03G000105
描述	putative late blight resistance protein homolog R1B-16
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1172058 - 1175844 / `+`

ID 对照

NCBI Gene ID	`LOC131016879`
GeneID	`131016879`
locus_tag	`-`
NCBI Name	`LOC131016879`
原始查询	`SmilChr03G000105`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-16
产物	putative late blight resistance protein homolog R1B-16
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=32; qcov=0.462; evalue=4.49e-20; confidence=low
Rice	`Os07g0186500` - identity=32; qcov=0.455; evalue=1.89e-23; confidence=low
GO	GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016879

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057801643.1`
2	Cell membrane	细胞膜	0.80000	`XP_057801644.1`
3	Nucleus	细胞核	0.80000	`XP_057801643.1`
4	Cytosol	细胞质基质	0.40000	`XP_057801643.1`
5	Chromosome	染色体	0.00000	`XP_057801643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1172518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:1172522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B104,B20,C18,C2
`Chr3:1172524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,A9,C19,C61,C65
`Chr3:1172535`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B72,B86,C26,C35
`Chr3:1172673`	`CG`	`C`	1bp_deletion	frameshift_variant	12	B127,B56,B57,B64,B72,B91,C14,C24,C63,C68,C87,D5
`Chr3:1172675`	`ATG`	`A`	2bp_deletion	frameshift_variant	11	B127,B56,B57,B64,B72,B91,C14,C24,C68,C87,D5
`Chr3:1172683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B112
`Chr3:1172703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr3:1172868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C28,C59,C68
`Chr3:1172894`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B3,C41
`Chr3:1172894`	`TC`	`T`	1bp_deletion	CDS_variant	2	B3,C41
`Chr3:1172993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B30,B72,C35,C42,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801643.1

467 aa

234

467

WHD_DRP

LRR_14

PF23559 WHD_DRP 4-75 aa PF23598 LRR_14 128-402 aa

XP_057801644.1

426 aa

213

426

NB-ARC

PF00931 NB-ARC 286-412 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801643.1`	Pfam	`PF23559`	WHD_DRP	Domain	4	75	2.4e-19	69.9	Disease resistance protein Winged helix domain
`XP_057801643.1`	Pfam	`PF23598`	LRR_14	Repeat	128	402	5.6e-23	82.0	Leucine-rich repeat region
`XP_057801644.1`	Pfam	`PF00931`	NB-ARC	Domain	286	412	5.9e-28	98.3	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945660.1
TCTTACTTTACTTCACATAAAGGTAGCAATTTCACTTCTTTAATGGATTTGTTAGGATTCGGCACTACAGTATGTCTTCTGCTTTCATAATTGATGGTGTTCTTGGAAATTTTATAATCTAATCTACTTTCTTCCTTTTTTCTTCTAGATCACATTAGAAAAATGAAAAATCAATCAAGCAAAACCACTTTTTTGGATGCCACAACTTTTCAAAATGATCTGTATTGTCATTTTCACAAAAAATACTCGATGAATACTGA...

XM_057945661.1
TCACATAAAGGTAGCAATTTCACTTCTTTAATGGATTTGTTAGGATTCGGCACTACAGTATGTCTTCTGCTTTCATAATTGATGGTGTTCTTGGAAATTTTATAATCTAATCTACTTTCTTCCTTTTTTCTTCTAGATCACATTAGAAAAATGAAAAATCAATCAAGCAAAACCACTTTTTTGGATGCCACAACTTTTCAAAATGATCTGTATTGTCATTTTCACAAAAAATACTCGATGAATACTGATCATCATCAATC...

CDS

2 records

下载 CDS FASTA

LOC131016879
ATGGCCTATGCTGCTCTTGTCTCCCTCACAAACACCATAGATCGATTCCTTAACAGCAATCTATATTCCATCTCTGTTGAAGAAAAACAACAAATTACATCTCTCCTTGATTATGTTACTCCCTTTCAAGACTTCCTCGATAAATTTCCAGACAAATTCAAGAGTTTGGAAGGGCGAATGAGGGAAGTGGCAAATGAAGCAGAAGATATCTTAGAATATCTTGTGTTGGAAAAGGTTTTCTTGTCTTCTGATGAAGAGTC...

LOC131016879
ATGGGTTCCTTCCCGGAAGATGATGAGATCCATGTTGTGAAACTCATGAGGTTGTGGGTAGCTGAGGGCTTTGTGAAGTTTTCAATCAACTCGAACAACTTTGAAGAGGTGGCGGAAGAGTGTTTAGATGAACTCGTGAAGAGAAACCTTGTTTTGGTCACAAAGAGGAAATCTGATGGCAGAATCAAAAGCTGCAGCCTCCATGATATGATGAGGGACTTGTGCATAAGAAAAGCGCATGAAAGTCAGTTTTTCTTGAA...

Protein

2 records

下载 Protein FASTA

XP_057801643.1
MGSFPEDDEIHVVKLMRLWVAEGFVKFSINSNNFEEVAEECLDELVKRNLVLVTKRKSDGRIKSCSLHDMMRDLCIRKAHESQFFLNLMDKHVEKEHFTERIKNQRCVSIDSYHLRYLSDDDDSTIHSIRCSKYDLVKLNFVKGVRLLRVLDTVPADVESSPSVHQLCELFHLRYLAINYMESIPNGLSMLKNLQTLIIDRERRQKIMVGIVCILVLGWDTPQLRHVHFHGTICFEDPNETTLSLESLQTLSHVSHRNCT...

XP_057801644.1
MAYAALVSLTNTIDRFLNSNLYSISVEEKQQITSLLDYVTPFQDFLDKFPDKFKSLEGRMREVANEAEDILEYLVLEKVFLSSDEESELHDELDRGTVIKDINLKMENMWKTNVADNSLKVRIRNVVNEAKKINCFLEWETNHIRFRDKRRFLPAEFAMFKSRFHFINHLKKMGSEIDSIMAEATAVKNNNSDKAASSSGLAPPDRVSDDEKQEEEETECYRSSKHELQMERVMEEIALIAAQVKEIKDSSSSKDVERGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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