Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000111`

染色体: Chr03 坐标: 1229020-1261784 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000111`
名称	SmilChr03G000111
描述	putative late blight resistance protein homolog R1A-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	1229020 - 1261784 / `+`

ID 对照

NCBI Gene ID	`LOC131016784`
GeneID	`131016784`
locus_tag	`-`
NCBI Name	`LOC131016784`
原始查询	`SmilChr03G000111`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-3
产物	putative late blight resistance protein homolog R1A-3
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29; qcov=0.695; evalue=7.8e-69; confidence=low
Rice	`Os07g0186500` - identity=32.3; qcov=0.472; evalue=3.95e-70; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016784

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801492.1`
2	Cytosol	细胞质基质	0.20000	`XP_057801492.1`
3	Nucleus	细胞核	0.00000	`XP_057801492.1`
4	Chromosome	染色体	0.00000	`XP_057801492.1`
5	Centromere	着丝粒	0.00000	`XP_057801492.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:1229138`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B108,B125,D8
`Chr3:1229212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,B99,C67
`Chr3:1229217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr3:1229255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr3:1257855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr3:1257856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:1257905`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,C87
`Chr3:1257934`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr3:1257950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:1258001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C69
`Chr3:1258047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B126,B139,C26,D10
`Chr3:1258049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801492.1

1136 aa

568

1136

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 428-595 aa PF23559 WHD_DRP 679-750 aa PF23598 LRR_14 811-1108 aa

XP_057801493.1

1136 aa

568

1136

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 428-595 aa PF23559 WHD_DRP 679-750 aa PF23598 LRR_14 811-1108 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801492.1`	Pfam	`PF00931`	NB-ARC	Domain	428	595	9.2e-41	140.0	NB-ARC domain
`XP_057801492.1`	Pfam	`PF23559`	WHD_DRP	Domain	679	750	2.5e-18	66.6	Disease resistance protein Winged helix domain
`XP_057801492.1`	Pfam	`PF23598`	LRR_14	Repeat	811	1108	9.5e-22	77.9	Leucine-rich repeat region
`XP_057801493.1`	Pfam	`PF00931`	NB-ARC	Domain	428	595	9.4e-41	140.0	NB-ARC domain
`XP_057801493.1`	Pfam	`PF23559`	WHD_DRP	Domain	679	750	2.5e-18	66.6	Disease resistance protein Winged helix domain
`XP_057801493.1`	Pfam	`PF23598`	LRR_14	Repeat	811	1108	9.4e-22	77.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945509.1
ATCTGCTTACTAAAAAAAGAATTAAAAGAAAAAGAAAACAAATAGTTTCCTGCATCATCAGAGATGGCCTATGCTGCTCTTGTCTCCCTCACAAACACCATAGATCGATTCCTTAACAGCAATCTATATTCCATTTCTGTTGAAGAAAAACAACAAATTACATCTCTCCTTGATTATGTTACTCCCTTTCAAGACTTCCTCGATAAATTTCCAGACAAATTCAAGAGTTTGGAAGGGCGAATGAGGGAAGTGGCAAATGA...

XM_057945510.1
TTTTTTTCTCTTAAAGGAGGATATATTTTTTTCTGGATGAGATAAAAGTGACCAGCCACTTGCATTCTTTTTTACAGTTGGAATCTAAATTGTTGAAACTGAGGGAAGCAGGAACATCATCTTAATGAGTTTGGATTAATAAAATGTTTCAAGATAGTCTTTATTTGCATATTTATAGGCCAAAAAGTTGCTTGAGATCCATAATCATCTTTCTTGATTCAAATGCATATTTAATTTTAGTGGATAAGCAATATGAAAAC...

CDS

2 records

下载 CDS FASTA

LOC131016784
ATGGCCTATGCTGCTCTTGTCTCCCTCACAAACACCATAGATCGATTCCTTAACAGCAATCTATATTCCATTTCTGTTGAAGAAAAACAACAAATTACATCTCTCCTTGATTATGTTACTCCCTTTCAAGACTTCCTCGATAAATTTCCAGACAAATTCAAGAGTTTGGAAGGGCGAATGAGGGAAGTGGCAAATGAAGCAGAAGATATCTTAGAATATCTTGTGTTGGAAAAGGTTTTCTTGTCTTCAGATCAAGAGTC...

LOC131016784
ATGGCCTATGCTGCTCTTGTCTCCCTCACAAACACCATAGATCGATTCCTTAATAGCAATCTATATTCCATCTCTGTTGAAGAAGAACAACAAATTACATCTCTCCTTGAGTATGTTACTCCCTTCCAAGACTTCCTCGATAAATTTCCAGACAAGTTCAAGAGTTTGGAAGAGCGGATGAGGGAAGCGGCAAATGAAGCAGAAGATATCTTAGAATATCTTGTTTTGGAAAAGGTTTTCTTGTCTTCAGATCAAGAGTC...

Protein

2 records

下载 Protein FASTA

XP_057801492.1
MAYAALVSLTNTIDRFLNSNLYSISVEEKQQITSLLDYVTPFQDFLDKFPDKFKSLEGRMREVANEAEDILEYLVLEKVFLSSDQESELHDDQLDRDSMIEDTILKLEKMLKECGEDILRQKAEDNILRARIRDVGLEVGKLMGFLKWYRDHIRFRDKWRFLPAKYAMFKSKRQFINHLKKKRNEIDSIMAEVIAMRNISDAAAASSSELAPVDQVSDESAEHHRFDKWKFLPGKFTKFKFKHHLKKIGKELFSKKNKSS...

XP_057801493.1
MAYAALVSLTNTIDRFLNSNLYSISVEEEQQITSLLEYVTPFQDFLDKFPDKFKSLEERMREAANEAEDILEYLVLEKVFLSSDQESELHDDQLDRDSMIEDTILKLEKMLKECGEDILRQKAEDNILRARIRDVGLEVGKLMGFLKWYRDHIRFRDKWRFLPAKYAMFKSKRQFINHLKKKRNEIDSIMAEVIAMRNISDAAAASSSELAPVDQVSDESAEHHRFDKWKFLPGKFTKFKFKHHLKKIGKELFSKKNKSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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