当前解析结果
SmilChr03G000112| 统一新 Gene ID | SmilChr03G000112 |
|---|---|
| 名称 | SmilChr03G000112 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1241646 - 1254640 / - |
| NCBI Gene ID | LOC131016798 |
|---|---|
| GeneID | 131016798 |
| locus_tag | - |
| NCBI Name | LOC131016798 |
| 原始查询 | SmilChr03G000112 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.4; qcov=1.03; evalue=3.89e-66; confidence=low |
| Rice | Os07g0186500- identity=31; qcov=0.864; evalue=8.76e-84; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016798 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057801520.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057801521.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057801518.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801518.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801518.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1241747 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | B111,B22,B76,B77,C27,C30,C5,C76 |
Chr3:1241753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C65 |
Chr3:1241807 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B103,B119,C28,C31,C68 |
Chr3:1241807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B119,C28,C31,C68 |
Chr3:1241848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,A6 |
Chr3:1241857 |
C |
T |
EMS_canonical_SNV | stop_gained | 26 | A11,A16,A7,B113,B21,B24,B38,B39,B44,B54,B55,B64,B7,B78,B86,B99,C12,C21,C28,C32,C55,C58,C68,C73,C83,D8 |
Chr3:1241859 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,A21,B99,C33,C83 |
Chr3:1241904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B90,B92,C10 |
Chr3:1241913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr3:1241917 |
G |
GAC |
2bp_insertion | frameshift_variant | 12 | A11,B24,B38,B54,B86,B99,C12,C21,C28,C58,C68,C83 |
Chr3:1241924 |
T |
TA |
1bp_insertion | frameshift_variant | 32 | A13,A16,A18,A24,A9,B1,B111,B118,B127,B20,B33,B38,B39,B44,B55,B59,B71,B78,B83,B85,B88,C14,C26,C35,C4,C59,C63,C64,C71,C80,C86,D10 |
Chr3:1241928 |
A |
AAT |
2bp_insertion | frameshift_variant | 29 | A13,A16,A18,A9,B1,B111,B118,B127,B20,B33,B38,B39,B44,B55,B59,B78,B83,B85,B88,C14,C26,C35,C4,C59,C63,C64,C71,C86,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801518.1PF00931
NB-ARC 251-414 aa
PF23559
WHD_DRP 499-569 aa
XP_057801519.1PF00931
NB-ARC 234-397 aa
PF23559
WHD_DRP 482-552 aa
XP_057801520.1PF00931
NB-ARC 180-343 aa
PF23559
WHD_DRP 428-498 aa
XP_057801521.1PF00931
NB-ARC 177-343 aa
PF23559
WHD_DRP 429-499 aa
PF23598
LRR_14 558-821 aa
XP_057801522.1PF00931
NB-ARC 110-273 aa
PF23559
WHD_DRP 358-428 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801518.1 |
Pfam | PF00931 |
NB-ARC | Domain | 251 | 414 | 5.8e-40 | 137.4 | NB-ARC domain |
XP_057801518.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 499 | 569 | 2.8e-17 | 63.2 | Disease resistance protein Winged helix domain |
XP_057801519.1 |
Pfam | PF00931 |
NB-ARC | Domain | 234 | 397 | 6.1e-40 | 137.3 | NB-ARC domain |
XP_057801519.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 482 | 552 | 2.7e-17 | 63.3 | Disease resistance protein Winged helix domain |
XP_057801520.1 |
Pfam | PF00931 |
NB-ARC | Domain | 180 | 343 | 7.3e-40 | 137.1 | NB-ARC domain |
XP_057801520.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 428 | 498 | 2.4e-17 | 63.4 | Disease resistance protein Winged helix domain |
XP_057801521.1 |
Pfam | PF00931 |
NB-ARC | Domain | 177 | 343 | 2e-40 | 138.9 | NB-ARC domain |
XP_057801521.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 429 | 499 | 3.2e-18 | 66.3 | Disease resistance protein Winged helix domain |
XP_057801521.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 558 | 821 | 1.1e-19 | 71.2 | Leucine-rich repeat region |
XP_057801522.1 |
Pfam | PF00931 |
NB-ARC | Domain | 110 | 273 | 6.4e-40 | 137.3 | NB-ARC domain |
XP_057801522.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 358 | 428 | 1.9e-17 | 63.7 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。