当前解析结果
SmilChr03G000114| 统一新 Gene ID | SmilChr03G000114 |
|---|---|
| 名称 | SmilChr03G000114 |
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1263204 - 1265204 / - |
| NCBI Gene ID | LOC131015747 |
|---|---|
| GeneID | 131015747 |
| locus_tag | - |
| NCBI Name | LOC131015747 |
| 原始查询 | SmilChr03G000114 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 产物 | putative late blight resistance protein homolog R1B-17 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=28.7; qcov=0.901; evalue=3.85e-58; confidence=low |
| Rice | Os07g0186500- identity=30.9; qcov=0.961; evalue=1.07e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015747 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057800152.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057800152.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057800152.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057800152.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057800152.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1263202 |
ATC |
A |
2bp_deletion | frameshift_variant | 3 | B68,B89,C53 |
Chr3:1263206 |
A |
ACC |
2bp_insertion | frameshift_variant | 3 | B68,B89,C53 |
Chr3:1263206 |
A |
ACC |
2bp_insertion | CDS_variant | 3 | B68,B89,C53 |
Chr3:1263230 |
TC |
T |
1bp_deletion | frameshift_variant | 51 | A16,A18,A23,A25,A6,A8,B10,B101,B110,B117,B122,B131,B134,B21,B23,B24,B3,B33,B35,B4,B44,B47,B51,B58,B67,B76,B77,B8,B80,B90,B94,B99,C13,C28,C3,C30,C41,C42,C43,C45,C54,C60,C62,C68,C74,C81,C84,D2,D4,D8,D9 |
Chr3:1263235 |
ACT |
A |
2bp_deletion | frameshift_variant | 50 | A16,A18,A23,A25,A6,A8,B10,B101,B110,B117,B122,B131,B134,B21,B23,B24,B3,B33,B35,B4,B44,B47,B51,B58,B67,B77,B8,B80,B90,B94,B99,C13,C28,C3,C30,C41,C42,C43,C45,C54,C60,C62,C68,C74,C81,C84,D2,D4,D8,D9 |
Chr3:1263284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr3:1263316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:1263343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,C14,C4 |
Chr3:1263354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,C14,C4 |
Chr3:1263372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B78,D9 |
Chr3:1263410 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr3:1263418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,C10,C74,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800152.1PF00931
NB-ARC 157-319 aa
PF23559
WHD_DRP 405-475 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800152.1 |
Pfam | PF00931 |
NB-ARC | Domain | 157 | 319 | 4.8e-39 | 134.4 | NB-ARC domain |
XP_057800152.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 405 | 475 | 4e-18 | 65.9 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。