当前解析结果
SmilChr03G000118| 统一新 Gene ID | SmilChr03G000118 |
|---|---|
| 名称 | SmilChr03G000118 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1294300 - 1298309 / + |
| NCBI Gene ID | LOC131016786 |
|---|---|
| GeneID | 131016786 |
| locus_tag | - |
| NCBI Name | LOC131016786 |
| 原始查询 | SmilChr03G000118 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29.2; qcov=0.694; evalue=3.79e-68; confidence=low |
| Rice | Os07g0186500- identity=30.6; qcov=0.488; evalue=4.34e-70; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016786 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057801497.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057801497.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801497.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801497.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801497.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1294369 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B46,C61,D11 |
Chr3:1294371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,C61 |
Chr3:1294876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:1294946 |
C |
CA |
1bp_insertion | frameshift_variant | 7 | B23,B34,B57,B64,C70,C72,D8 |
Chr3:1294948 |
G |
GCA |
2bp_insertion | frameshift_variant | 7 | B23,B34,B57,B64,C70,C72,D8 |
Chr3:1295064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B20,B48,D6 |
Chr3:1295079 |
GTT |
G |
2bp_deletion | frameshift_variant | 1 | B13 |
Chr3:1295079 |
GTT |
G |
2bp_deletion | CDS_variant | 1 | B13 |
Chr3:1295270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr3:1295417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr3:1295464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B3,B95,C19,C40,C8 |
Chr3:1295472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801497.1PF00931
NB-ARC 421-588 aa
PF23559
WHD_DRP 672-743 aa
PF23598
LRR_14 804-1074 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801497.1 |
Pfam | PF00931 |
NB-ARC | Domain | 421 | 588 | 3.1e-40 | 138.3 | NB-ARC domain |
XP_057801497.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 672 | 743 | 3.4e-18 | 66.2 | Disease resistance protein Winged helix domain |
XP_057801497.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 804 | 1074 | 9e-22 | 78.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。