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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000135

染色体: Chr03 坐标: 1479033-1486687 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000135
名称SmilChr03G000135
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向1479033 - 1486687 / -

ID 对照

NCBI Gene IDLOC131016886
GeneID131016886
locus_tag-
NCBI NameLOC131016886
原始查询SmilChr03G000135

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物probable LRR receptor-like serine/threonine-protein kinase At3g47570
ArabidopsisAT1G08590 (AT1G08590)
Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837381]
identity=39.4; qcov=0.877; evalue=4.44e-59; confidence=medium
RiceOs02g0609900
-
identity=37.7; qcov=0.995; evalue=8.85e-64; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131016886

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057801657.1
2 Endoplasmic reticulum 内质网 0.20000 XP_057801657.1
3 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057801657.1
4 Nucleus 细胞核 0.00000 XP_057801658.1
5 Chromosome 染色体 0.00000 XP_057801658.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:1479125 A AG 1bp_insertion frameshift_variant 2 B76,C27
Chr3:1479125 A AG 1bp_insertion CDS_variant 2 B76,C27
Chr3:1479143 C T EMS_canonical_SNV CDS_variant 2 A8,B45
Chr3:1479152 TA T 1bp_deletion frameshift_variant 1 B6
Chr3:1479152 TA T 1bp_deletion CDS_variant 1 B6
Chr3:1479212 C T EMS_canonical_SNV CDS_variant 1 C2
Chr3:1479236 G A EMS_canonical_SNV CDS_variant 2 A8,B37
Chr3:1479238 AGC A 2bp_deletion frameshift_variant 7 B125,B128,B131,B26,C20,C39,C6
Chr3:1479241 AAC A 2bp_deletion frameshift_variant 15 A16,A18,B109,B140,B22,B64,B84,C3,C33,C40,C41,C44,C50,C54,C59
Chr3:1479244 C CTT 2bp_insertion frameshift_variant 15 A16,A18,B109,B140,B22,B64,B84,C3,C33,C40,C41,C44,C50,C54,C59
Chr3:1479246 C T EMS_canonical_SNV CDS_variant 1 C30
Chr3:1479261 C T EMS_canonical_SNV CDS_variant 1 B131

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801657.1
432 aa
N
1
216
432
LRRNT_2
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
C
PF08263 LRRNT_2 46-85 aa PF00560 LRR_1 91-112 aa PF00560 LRR_1 114-134 aa PF13855 LRR_8 161-199 aa PF00560 LRR_1 165-187 aa PF00560 LRR_1 189-210 aa PF00560 LRR_1 214-234 aa PF00560 LRR_1 241-262 aa PF00560 LRR_1 264-285 aa PF13855 LRR_8 264-323 aa PF00560 LRR_1 288-308 aa PF00560 LRR_1 312-331 aa PF00560 LRR_1 336-358 aa PF13855 LRR_8 336-395 aa PF00560 LRR_1 360-382 aa PF00560 LRR_1 384-406 aa
XP_057801658.1
408 aa
N
1
204
408
LRRNT_2
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_6
LRR_1
LRR_1
LRR_8
LRR_6
LRR_1
LRR_1
C
PF08263 LRRNT_2 46-85 aa PF00560 LRR_1 91-112 aa PF00560 LRR_1 114-134 aa PF13855 LRR_8 137-175 aa PF00560 LRR_1 141-163 aa PF00560 LRR_1 165-186 aa PF00560 LRR_1 190-210 aa PF00560 LRR_1 217-238 aa PF00560 LRR_1 240-261 aa PF13855 LRR_8 240-299 aa PF00560 LRR_1 264-284 aa PF13516 LRR_6 287-301 aa PF00560 LRR_1 288-307 aa PF00560 LRR_1 312-334 aa PF13855 LRR_8 312-371 aa PF13516 LRR_6 335-348 aa PF00560 LRR_1 336-358 aa PF00560 LRR_1 360-382 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801657.1 Pfam PF08263 LRRNT_2 Family 46 85 1.7e-10 41.7 Leucine rich repeat N-terminal domain
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 91 112 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 114 134 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF13855 LRR_8 Repeat 161 199 6.5e-31 106.6 Leucine rich repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 165 187 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 189 210 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 214 234 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 241 262 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 264 285 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF13855 LRR_8 Repeat 264 323 6.5e-31 106.6 Leucine rich repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 288 308 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 312 331 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 336 358 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF13855 LRR_8 Repeat 336 395 6.5e-31 106.6 Leucine rich repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 360 382 1.1e-38 123.5 Leucine Rich Repeat
XP_057801657.1 Pfam PF00560 LRR_1 Repeat 384 406 1.1e-38 123.5 Leucine Rich Repeat
XP_057801658.1 Pfam PF08263 LRRNT_2 Family 46 85 1.5e-10 41.8 Leucine rich repeat N-terminal domain
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 91 112 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 114 134 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF13855 LRR_8 Repeat 137 175 4.4e-31 107.1 Leucine rich repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 141 163 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 165 186 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 190 210 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 217 238 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 240 261 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF13855 LRR_8 Repeat 240 299 4.4e-31 107.1 Leucine rich repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 264 284 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF13516 LRR_6 Repeat 287 301 3.6e-05 24.2 Leucine Rich repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 288 307 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 312 334 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF13855 LRR_8 Repeat 312 371 4.4e-31 107.1 Leucine rich repeat
XP_057801658.1 Pfam PF13516 LRR_6 Repeat 335 348 3.6e-05 24.2 Leucine Rich repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 336 358 3.2e-39 125.2 Leucine Rich Repeat
XP_057801658.1 Pfam PF00560 LRR_1 Repeat 360 382 3.2e-39 125.2 Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057945675.1
ACTTGCATTGACTTCCAAAAAATGTGGAAAATTTACATTCTGCAATTCTCAGTCTCACAAGAAGTGTTTTAGATTTGAATATAAATGGCATTTGTAGGCTTCTTGTTTTCTCACACAATTAGCACTCACAATATGGATACATTTTCCACCCTTCTTTTGCTTCTCATATTGTTTTCTTGTGTTATCCTCTCTGCTGCACACAACATAACTCAAATCAAAAGTGATGAATATATACTTCTTGCCTTCAAATCCCACATCAC...
XM_057945674.1
ACTTGCATTGACTTCCAAAAAATGTGGAAAATTTACATTCTGCAATTCTCAGTCTCACAAGAAGTGTTTTAGATTTGAATATAAATGGCATTTGTAGGCTTCTTGTTTTCTCACACAATTAGCACTCACAATATGGATACATTTTCCACCCTTCTTTTGCTTCTCATATTGTTTTCTTGTGTTATCCTCTCTGCTGCACACAACATAACTCAAATCAAAAGTGATGAATATATACTTCTTGCCTTCAAATCCCACATCAC...

CDS

2 records

下载 CDS FASTA
LOC131016886
ATGGCATTTGTAGGCTTCTTGTTTTCTCACACAATTAGCACTCACAATATGGATACATTTTCCACCCTTCTTTTGCTTCTCATATTGTTTTCTTGTGTTATCCTCTCTGCTGCACACAACATAACTCAAATCAAAAGTGATGAATATATACTTCTTGCCTTCAAATCCCACATCACTTCAGATCCTTCCAATATTTTGAAAAATAATTGGACCAGTGGAACCTCATTTTGCACATGGATAGGAGTTACTTGTGATTCGCG...
LOC131016886
ATGGCATTTGTAGGCTTCTTGTTTTCTCACACAATTAGCACTCACAATATGGATACATTTTCCACCCTTCTTTTGCTTCTCATATTGTTTTCTTGTGTTATCCTCTCTGCTGCACACAACATAACTCAAATCAAAAGTGATGAATATATACTTCTTGCCTTCAAATCCCACATCACTTCAGATCCTTCCAATATTTTGAAAAATAATTGGACCAGTGGAACCTCATTTTGCACATGGATAGGAGTTACTTGTGATTCGCG...

Protein

2 records

下载 Protein FASTA
XP_057801657.1
MAFVGFLFSHTISTHNMDTFSTLLLLLILFSCVILSAAHNITQIKSDEYILLAFKSHITSDPSNILKNNWTSGTSFCTWIGVTCDSRRSRVTKLDLSDMELEGSIPQEIGNLSSLVYLDLSHNFFHGCIPQSIFEFVISRMYFIYTVILSGRLPKDICMHNNLQSLKLLNLSRNEMEGDIPSSLYQCPQLESIDLSRNSFGGYVPTQIWNITLLKVLDLSSNNLRGRLPKDICSHNNLQRLKLLSLRWNKLEGDIPLSLG...
XP_057801658.1
MAFVGFLFSHTISTHNMDTFSTLLLLLILFSCVILSAAHNITQIKSDEYILLAFKSHITSDPSNILKNNWTSGTSFCTWIGVTCDSRRSRVTKLDLSDMELEGSIPQEIGNLSSLVYLDLSHNFFHGRLPKDICMHNNLQSLKLLNLSRNEMEGDIPSSLYQCPQLESIDLSRNSFGGYVPTQIWNITLLKVLDLSSNNLRGRLPKDICSHNNLQRLKLLSLRWNKLEGDIPLSLGQCTQLESIDLSSNNFGGNVPREFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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