Resolved gene
SmilChr03G000148| Standard Gene ID | SmilChr03G000148 |
|---|---|
| Name | SmilChr03G000148 |
| Description | uncharacterized SmilChr03G000148 |
| Chromosome / SeqID | Chr03 / NC_080389.1 |
| Coordinates and Strand | 1621937 - 1625847 / + |
| NCBI Gene ID | LOC131015756 |
|---|---|
| GeneID | 131015756 |
| locus_tag | - |
| NCBI Name | LOC131015756 |
| Original query | SmilChr03G000148 |
| Source | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| Description | hit=Os06g0484800; species=rice; confidence=low |
| Product | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=28.8; qcov=0.371; evalue=4.71e-43; confidence=low |
| Rice | Os06g0484800- identity=27.9; qcov=0.654; evalue=1.12e-81; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015756 |
| Rank | Location | Chinese | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057800164.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057800164.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057800164.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800164.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800164.1 |
The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.
| Position | REF | ALT | Type | Effect | Carriers | Samples |
|---|---|---|---|---|---|---|
Chr3:1621954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr3:1622027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:1622056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,D10 |
Chr3:1622065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B98,C37,C40,C50 |
Chr3:1622085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B49,B53,C42 |
Chr3:1622088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr3:1622096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B59,B75,C19,C43 |
Chr3:1622130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr3:1622132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr3:1622142 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr3:1622155 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B122,B130 |
Chr3:1622182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,C5 |
Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.
XP_057800164.1PF00078
RVT_1 336-595 aa
PF13966
zf-RVT 853-932 aa
PF13456
RVT_3 1037-1156 aa
| Protein ID | Source | Domain ID | Domain name | Type | Start aa | End aa | E-value | Score | Description |
|---|---|---|---|---|---|---|---|---|---|
XP_057800164.1 |
Pfam | PF00078 |
RVT_1 | Domain | 336 | 595 | 9.7e-29 | 101.4 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057800164.1 |
Pfam | PF13966 |
zf-RVT | Domain | 853 | 932 | 6e-16 | 59.6 | zinc-binding in reverse transcriptase |
XP_057800164.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1037 | 1156 | 5.2e-14 | 53.0 | Reverse transcriptase-like |
Download genomic DNA (gene region only)
Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.
1 records
Download cDNA FASTA1 records
Download CDS FASTA1 records
Download Protein FASTAUpstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.
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