当前解析结果
SmilChr03G000154| 统一新 Gene ID | SmilChr03G000154 |
|---|---|
| 名称 | SmilChr03G000154 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1679463 - 1682183 / + |
| NCBI Gene ID | LOC131015759 |
|---|---|
| GeneID | 131015759 |
| locus_tag | - |
| NCBI Name | LOC131015759 |
| 原始查询 | SmilChr03G000154 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=25.7; qcov=0.971; evalue=1.4e-62; confidence=low |
| Rice | Os07g0186500- identity=27.8; qcov=0.791; evalue=5.37e-73; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015759 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057800168.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057800168.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057800168.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800168.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800168.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1679577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B14,B19,C37 |
Chr3:1679624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:1679700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,B37,C63 |
Chr3:1679739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B17,C33,C64 |
Chr3:1679756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:1679764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,C62 |
Chr3:1679766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B121,C11,C51,C69 |
Chr3:1679767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr3:1679770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,C20,C6 |
Chr3:1679787 |
GT |
G |
1bp_deletion | frameshift_variant | 13 | B102,B119,B32,B33,B61,B72,B8,B91,C15,C27,C54,C78,D5 |
Chr3:1679790 |
TCA |
T |
2bp_deletion | frameshift_variant | 10 | B119,B32,B33,B61,B72,B91,C15,C27,C54,C78 |
Chr3:1679829 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800168.1PF00931
NB-ARC 180-343 aa
PF23559
WHD_DRP 430-501 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800168.1 |
Pfam | PF00931 |
NB-ARC | Domain | 180 | 343 | 1.6e-40 | 139.2 | NB-ARC domain |
XP_057800168.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 501 | 7.6e-15 | 55.4 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。