当前解析结果
SmilChr03G000161| 统一新 Gene ID | SmilChr03G000161 |
|---|---|
| 名称 | SmilChr03G000161 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 1773757 - 1777973 / + |
| NCBI Gene ID | LOC131016845 |
|---|---|
| GeneID | 131016845 |
| locus_tag | - |
| NCBI Name | LOC131016845 |
| 原始查询 | SmilChr03G000161 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=30.2; qcov=0.875; evalue=5.56e-71; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=30.7; qcov=0.887; evalue=3.7e-83; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016845 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801599.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801599.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801599.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801599.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801599.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:1773991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr3:1774009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C31,C65,D11 |
Chr3:1774042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B29,B92 |
Chr3:1774071 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A8,C12 |
Chr3:1774071 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,C12 |
Chr3:1774103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr3:1774130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr3:1774156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C65,D2 |
Chr3:1774170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C87 |
Chr3:1774180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,C49 |
Chr3:1774333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B56,B63,C69,C70 |
Chr3:1774493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801599.1PF00931
NB-ARC 158-331 aa
PF23559
WHD_DRP 411-486 aa
PF23598
LRR_14 540-731 aa
XP_057801600.1PF00931
NB-ARC 158-331 aa
PF23559
WHD_DRP 411-486 aa
PF23598
LRR_14 540-731 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801599.1 |
Pfam | PF00931 |
NB-ARC | Domain | 158 | 331 | 8.1e-43 | 146.7 | NB-ARC domain |
XP_057801599.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 411 | 486 | 5.9e-18 | 65.4 | Disease resistance protein Winged helix domain |
XP_057801599.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 731 | 3.5e-17 | 62.9 | Leucine-rich repeat region |
XP_057801600.1 |
Pfam | PF00931 |
NB-ARC | Domain | 158 | 331 | 8.1e-43 | 146.7 | NB-ARC domain |
XP_057801600.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 411 | 486 | 5.9e-18 | 65.4 | Disease resistance protein Winged helix domain |
XP_057801600.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 731 | 3.5e-17 | 62.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。