Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000183

染色体: Chr03 坐标: 1946613-1956569 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000183
名称SmilChr03G000183
描述stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向1946613 - 1956569 / -

ID 对照

NCBI Gene IDLOC131016897
GeneID131016897
locus_tag-
NCBI NameLOC131016897
原始查询SmilChr03G000183

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like
产物stearoyl-[acyl-carrier-protein] 9-desaturase%2C chloroplastic-like
ArabidopsisAT3G02630 (AT3G02630)
Plant stearoyl-acyl-carrier-protein desaturase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820773]
identity=80.2; qcov=0.312; evalue=0; confidence=low
RiceOs04g0379900
-
identity=79.5; qcov=0.31; evalue=0; confidence=low
GOGO:0006633 (fatty acid biosynthetic process); GO:0009570 (chloroplast stroma); GO:0045300 (stearoyl-[ACP] desaturase activity)
KEGGsmil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF03405 (FA_desaturase_2); PF12253 (CAF1A_dimeriz); PF21796 (Cac1_C)
InterPro-
eggNOG-
NRGeneID:131016897

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057801674.1
2 Nucleus 细胞核 1.00000 XP_057801682.1
3 Chloroplast stroma 叶绿体基质 0.60000 XP_057801674.1
4 Chromosome 染色体 0.00000 XP_057801682.1
5 Centromere 着丝粒 0.00000 XP_057801682.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:1946917 C T EMS_canonical_SNV CDS_variant 5 A11,B105,B35,C58,C8
Chr3:1946938 G A EMS_canonical_SNV CDS_variant 4 B122,B75,B9,C22
Chr3:1946961 C T EMS_canonical_SNV CDS_variant 1 B29
Chr3:1947035 GC G 1bp_deletion frameshift_variant 1 B123
Chr3:1947035 GC G 1bp_deletion CDS_variant 1 B123
Chr3:1947059 G A EMS_canonical_SNV CDS_variant 1 B69
Chr3:1947084 G A EMS_canonical_SNV CDS_variant 1 C32
Chr3:1947096 C T EMS_canonical_SNV CDS_variant 1 B41
Chr3:1947145 G A EMS_canonical_SNV CDS_variant 4 C12,C51,C63,C67
Chr3:1947166 G A EMS_canonical_SNV CDS_variant 5 B29,B40,B65,B72,C20
Chr3:1947178 G A EMS_canonical_SNV CDS_variant 4 B19,C40,C9,D10
Chr3:1947190 C T EMS_canonical_SNV CDS_variant 5 B47,B57,B88,C40,C56

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801674.1
390 aa
N
1
195
390
FA_desaturase_2
C
PF03405 FA_desaturase_2 62-384 aa
XP_057801675.1
390 aa
N
1
195
390
FA_desaturase_2
C
PF03405 FA_desaturase_2 62-384 aa
XP_057801676.1
390 aa
N
1
195
390
FA_desaturase_2
C
PF03405 FA_desaturase_2 62-384 aa
XP_057801677.1
388 aa
N
1
194
388
FA_desaturase_2
C
PF03405 FA_desaturase_2 60-382 aa
XP_057801678.1
388 aa
N
1
194
388
FA_desaturase_2
C
PF03405 FA_desaturase_2 60-382 aa
XP_057801680.1
388 aa
N
1
194
388
FA_desaturase_2
C
PF03405 FA_desaturase_2 60-382 aa
XP_057801681.1
388 aa
N
1
194
388
FA_desaturase_2
C
PF03405 FA_desaturase_2 60-382 aa
XP_057801682.1
1181 aa
N
1
590
1181
CAF1A_dimeriz
Cac1_C
FA_desaturase_2
C
PF12253 CAF1A_dimeriz 497-566 aa PF21796 Cac1_C 725-775 aa PF03405 FA_desaturase_2 853-1175 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801674.1 Pfam PF03405 FA_desaturase_2 Domain 62 384 4.2e-160 532.6 Fatty acid desaturase
XP_057801675.1 Pfam PF03405 FA_desaturase_2 Domain 62 384 4.2e-160 532.6 Fatty acid desaturase
XP_057801676.1 Pfam PF03405 FA_desaturase_2 Domain 62 384 4.2e-160 532.6 Fatty acid desaturase
XP_057801677.1 Pfam PF03405 FA_desaturase_2 Domain 60 382 4.1e-160 532.7 Fatty acid desaturase
XP_057801678.1 Pfam PF03405 FA_desaturase_2 Domain 60 382 4.1e-160 532.7 Fatty acid desaturase
XP_057801680.1 Pfam PF03405 FA_desaturase_2 Domain 60 382 4.1e-160 532.7 Fatty acid desaturase
XP_057801681.1 Pfam PF03405 FA_desaturase_2 Domain 60 382 4.1e-160 532.7 Fatty acid desaturase
XP_057801682.1 Pfam PF12253 CAF1A_dimeriz Family 497 566 1.5e-19 70.6 Chromatin assembly factor 1 subunit A dimerization domain
XP_057801682.1 Pfam PF21796 Cac1_C Domain 725 775 2.3e-17 63.5 Chromatin assembly factor 1 subunit Cac1, C-terminal domain
XP_057801682.1 Pfam PF03405 FA_desaturase_2 Domain 853 1175 7.9e-159 528.5 Fatty acid desaturase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057945699.1
ATGTATTTGATTTGAAAAATGGCGGACTGCAAAATTGAGGAAATTTTTAGGCGCCAAACAAAGAAATATTCCGCCAAAATCAGCCTCTCACTGGCGGGAAGCTAGCAAATCTACATACCCAAAACCCAAAATCTCACTGCAAAATCGATGATACATTCCCAGAATTTCTGTTGCTCTTTCATTCCTCTCGAGCTTCAGATTTGTTCCGAGCTACATTCAGCTGATCTATCAGTGATTGTCGTCTCCAAAATCTCACAGGA...
XM_057945694.1
CTAAAATAAAAATATTGGAAGTCACACCTAATTTTAGATTTTGTGAAACACTACTAAATATATTCGTACAGTGATATAAATAAATAAATTAAATTAAATAGCAGTGGAAGTCTGAAACCAACCATTTGGAATAGTACAACCAGATCGCTTGACTTAGTTTTCAACATCAGCGGTGGGCGAAGGGTACAACCCCCACAAAGCAGGCGCCGCGCATCAGGTAGTTGTACCTTGGCGAAGAACACTGCCAATTTAGCTCCAAC...

CDS

8 records

下载 CDS FASTA
LOC131016897
ATGGCGGAAGTTGAGCCGATGAAAATTGACGTTGCGGAAGAAATGAAGCCGAAATCGGACGGCTCGGATCAGAAGAAGAGGCCTCAGAAAAGGAAAAGGTTGGAGCCATGTTCGTACAAAGTAAGCCCGGGAGAGAAACAGGCGAAAATAGAGGCATTGCGCAATGAAATCAACAGCCTTGTTAAATTTTGTAGAGATTTAGCGTTGGGAAGCAGAGAGGTGTTGTCGGAATATGTGGAGAAAGTAGGGTTCTCTTCTGT...
LOC131016897
ATGGCGCTGAAACTATGCATTGCTCCGAGCAAGATGCCTTCGTTTCCCGGTTTTCAGCTCAGATCTCACAGGGTTTCCATGGCTTCAACTATCCATTCCCCAGATGCTGGAAAAGCTAAAAAGCCTTTTAGTACCCCTCGGGAGGTTCGTGTTCAAGTCACTCACCCGTTGCCACCAGAGAAGCGCGAGATCTTCAATTCGTTGCAAGATTGGGCTGAAGAAAACATCCTGGTGCTCCTAAAGCCCGTTGAGAAGTGTTG...

Protein

8 records

下载 Protein FASTA
XP_057801674.1
MALKLCIAPSKMPSFPGFQLRSHRVSMASTIHSPSVDAGKAKKPFSTPREVRVQVTHPLPPEKREIFNSLQDWAEENILVLLKPVEKCWQPNDFLPDPSSEGFEEQVRELRKRTKELPDDYFVVLVGDMITEEALPTYQTMLNTLDAVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPGTDKNPYLGFIYTSFQERATFVSHGNTARLAKEHGDLKLAQICGIIAADEKRHE...
XP_057801675.1
MALKLCIAPSKMPSFPGFQLRSHRVSMASTIHSPSVDAGKAKKPFSTPREVRVQVTHPLPPEKREIFNSLQDWAEENILVLLKPVEKCWQPNDFLPDPSSEGFEEQVRELRKRTKELPDDYFVVLVGDMITEEALPTYQTMLNTLDAVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPGTDKNPYLGFIYTSFQERATFVSHGNTARLAKEHGDLKLAQICGIIAADEKRHE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器