Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000193`

染色体: Chr03 坐标: 2134207-2145325 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000193`
名称	SmilChr03G000193
描述	probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	2134207 - 2145325 / `+`

ID 对照

NCBI Gene ID	`LOC131016833`
GeneID	`131016833`
locus_tag	`-`
NCBI Name	`LOC131016833`
原始查询	`SmilChr03G000193`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic
产物	probable inactive ATP-dependent zinc metalloprotease FTSHI 4%2C chloroplastic
Arabidopsis	`AT5G64580` (EMB3144) AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836579] identity=83; qcov=0.914; evalue=0; confidence=high
Rice	`Os06g0669400` (OsFtsH2) - identity=39.9; qcov=0.563; evalue=1.89e-88; confidence=medium
GO	GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis); GO:0009534 (chloroplast thylakoid); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF05496 (RuvB_N); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131016833

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057801583.1`
2	Chloroplast thylakoid	类囊体	0.80000	`XP_057801583.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057801583.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.40000	`XP_057801583.1`
5	Chloroplast membrane	叶绿体膜	0.20000	`XP_057801583.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:2134571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B122,B136,B32,B61
`Chr3:2134628`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B90
`Chr3:2134632`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B74,C14
`Chr3:2134632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,C14
`Chr3:2134633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:2134644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B40,B46,C61
`Chr3:2134654`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	B122,B123,B71,C16,C3
`Chr3:2134654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B123,B71,C16,C3
`Chr3:2134693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B104,B120,B89,C72
`Chr3:2134709`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B24,B49,B79,B86
`Chr3:2134722`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:2134733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801583.1

851 aa

426

851

RuvB_N

AAA

AAA_lid_3

PF05496 RuvB_N 310-415 aa PF00004 AAA 348-482 aa PF17862 AAA_lid_3 512-551 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801583.1`	Pfam	`PF05496`	RuvB_N	Domain	310	415	4.4e-07	30.5	Holliday junction DNA helicase RuvB P-loop domain
`XP_057801583.1`	Pfam	`PF00004`	AAA	Domain	348	482	2.6e-42	145.1	ATPase family associated with various cellular activities (AAA)
`XP_057801583.1`	Pfam	`PF17862`	AAA_lid_3	Domain	512	551	5.2e-09	36.2	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009099228.1
CGCCCCGTCGCCCATTCTCCCTGCCGTGCGTCGGCCGCCACAGTCAGCCTCGCGGCTCAACCACCTAAACGGCTCATGATGGATTCATTGTTAGAGTTGAGTTAGCGAAATTCGACCGGTTATTTATCGTGCGCTTTCAAACTCTTACCAAAGGTTTTGTTGTTGGCACGAAGATGAAGTCGGGAGTTTGACACTGTTCAAAATTATCTGAAACTCTGCAGAAAAGTGCAAAAGATGCACCGTTGCAGCGCTTTGAACCC...

XR_009099229.1
CGCCCCGTCGCCCATTCTCCCTGCCGTGCGTCGGCCGCCACAGTCAGCCTCGCGGCTCAACCACCTAAACGGCTCATGATGGATTCATTGTTAGAGTTGAGTTAGCGAAATTCGACCGGTTATTTATCGTGCGCTTTCAAACTCTTACCAAAGGTTTTGTTGTTGGCACGAAGATGAAGTCGGGAGTTTGACACTGTTCAAAATTATCTGAAACTCTGCAGAAAAGTGCAAAAGATGCACCGTTGCAGCGCTTTGAACCC...

CDS

1 records

下载 CDS FASTA

LOC131016833
ATGCACCGTTGCAGCGCTTTGAACCCATCACTAGATAGTTTTGCGCCAAAACCCTCGTGCATTTCTCCCTCTTCAAATGGTCCACTAACTCAAAATGATAGATGGCCGAAATTCTTGTTTCTTCGGCGATTTGCTTCTACAGATGCGCGGTTCCAGTATGCTAGACGCGCCAGAAGACTCAGAATTAATGGTTCGTCAAACTCCAGCTCGAAACCGGTACAAGGAGAAACCGACTCCTCCCAACAGCTATTCGAGAGTTT...

Protein

1 records

下载 Protein FASTA

XP_057801583.1
MHRCSALNPSLDSFAPKPSCISPSSNGPLTQNDRWPKFLFLRRFASTDARFQYARRARRLRINGSSNSSSKPVQGETDSSQQLFESLKEVERERMNKLEEFERKANVQLERQLMMASEWSRALLTMKGKLKGTEWDPVNSHSIDFSDFKRLLDSNNVRFMEYSNYGQTVSVILPYKKEGKTESSEGDSKKEIVFRRHVVERMPIDCWNDVWRKLHQQLVNVDVLDVNNVPAEVYSSVATAVVWAMRLALAVGLYVWIDSM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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