当前解析结果
SmilChr03G000197| 统一新 Gene ID | SmilChr03G000197 |
|---|---|
| 名称 | SmilChr03G000197 |
| 描述 | leucine-rich repeat receptor protein kinase HPCA1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 2229827 - 2241868 / - |
| NCBI Gene ID | LOC131016797 |
|---|---|
| GeneID | 131016797 |
| locus_tag | - |
| NCBI Name | LOC131016797 |
| 原始查询 | SmilChr03G000197 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leucine-rich repeat receptor protein kinase HPCA1-like |
| 产物 | leucine-rich repeat receptor protein kinase HPCA1-like |
| Arabidopsis | AT1G79620 (AT1G79620)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844301] identity=58.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0329700- identity=54.5; qcov=0.985; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016797 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801516.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801516.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801516.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801516.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801516.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:2230038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr3:2230080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C14 |
Chr3:2230131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:2230158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B129,C44,C63,C67 |
Chr3:2230161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:2230224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:2230260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:2230263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr3:2230306 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C62 |
Chr3:2230306 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C62 |
Chr3:2230311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr3:2230344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801516.1PF08263
LRRNT_2 28-64 aa
PF00560
LRR_1 118-139 aa
PF00560
LRR_1 166-182 aa
PF00560
LRR_1 269-287 aa
PF00560
LRR_1 293-313 aa
PF00069
Pkinase 630-898 aa
PF07714
PK_Tyr_Ser-Thr 632-900 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801516.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 64 | 6.5e-07 | 30.2 | Leucine rich repeat N-terminal domain |
XP_057801516.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 118 | 139 | 8.4e-16 | 55.4 | Leucine Rich Repeat |
XP_057801516.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 166 | 182 | 8.4e-16 | 55.4 | Leucine Rich Repeat |
XP_057801516.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 269 | 287 | 8.4e-16 | 55.4 | Leucine Rich Repeat |
XP_057801516.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 293 | 313 | 8.4e-16 | 55.4 | Leucine Rich Repeat |
XP_057801516.1 |
Pfam | PF00069 |
Pkinase | Domain | 630 | 898 | 6.8e-45 | 154.2 | Protein kinase domain |
XP_057801516.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 632 | 900 | 1.6e-45 | 156.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。