Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000199`

染色体: Chr03 坐标: 2266347-2275551 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000199`
名称	SmilChr03G000199
描述	sister chromatid cohesion 1 protein 4-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	2266347 - 2275551 / `+`

ID 对照

NCBI Gene ID	`LOC131016785`
GeneID	`131016785`
locus_tag	`-`
NCBI Name	`LOC131016785`
原始查询	`SmilChr03G000199`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sister chromatid cohesion 1 protein 4-like
产物	sister chromatid cohesion 1 protein 4-like
Arabidopsis	`AT5G16270` (SYN4) sister chromatid cohesion 1 protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:831487] identity=66.4; qcov=0.26; evalue=5.13e-109; confidence=weak
Rice	`Os01g0897800` (OsRad21) - identity=82.1; qcov=0.167; evalue=5.95e-96; confidence=weak
GO	GO:0000795 (synaptonemal complex); GO:0003682 (chromatin binding); GO:0005515 (protein binding); GO:0007064 (mitotic sister chromatid cohesion); GO:0007130 (synaptonemal complex assembly); GO:0008278 (cohesin complex); GO:1990414 (replication-born double-strand break repair via sister chromatid exchange)
KEGG	-
Pfam	PF04824 (Rad21_Rec8); PF04825 (Rad21_Rec8_N)
InterPro	-
eggNOG	-
NR	GeneID:131016785

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801495.1`
2	Chromosome	染色体	0.60000	`XP_057801495.1`
3	Nucleoplasm	核质	0.60000	`XP_057801495.1`
4	Centromere	着丝粒	0.00000	`XP_057801495.1`
5	Chromatin	染色质	0.00000	`XP_057801495.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:2267115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C53
`Chr3:2268510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C28,D10
`Chr3:2268531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B29,B55
`Chr3:2268765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B31,B35,C83
`Chr3:2268825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B29,B55
`Chr3:2269464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B111,B97,C11,C51,C69
`Chr3:2269553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,C33,D3
`Chr3:2269854`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr3:2269871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B102,B13,C40,C60
`Chr3:2269935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,C33,D3
`Chr3:2269946`	`T`	`TTG`	2bp_insertion	frameshift_variant	1	C25
`Chr3:2269946`	`T`	`TTG`	2bp_insertion	CDS_variant	1	C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801495.1

1134 aa

567

1134

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-101 aa PF04824 Rad21_Rec8 1078-1128 aa

XP_057801496.1

1101 aa

550

1101

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-101 aa PF04824 Rad21_Rec8 1045-1095 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801495.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	101	4.5e-38	130.5	N terminus of Rad21 / Rec8 like protein
`XP_057801495.1`	Pfam	`PF04824`	Rad21_Rec8	Family	1078	1128	5.2e-18	64.8	Conserved region of Rad21 / Rec8 like protein
`XP_057801496.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	101	4.4e-38	130.5	N terminus of Rad21 / Rec8 like protein
`XP_057801496.1`	Pfam	`PF04824`	Rad21_Rec8	Family	1045	1095	4.9e-18	64.9	Conserved region of Rad21 / Rec8 like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945512.1
GAAAGATCTGAGCCGTCCATCTTCATTACGCTGTAGATTCTACTCCATTTCGGCATTTCAAACAGCACGAATTATTTTACGGGTCCAAAAGGCGCTTCACTTTCGTTTTTTGAACTCGAAAAGAAATATTTTGGTGATCAAAATCAGGAAAATTTCCCTCGGATTGCACGAAATTCGAGATTCGCGCTCTAATTTCTCTGTACCAGCGCATACAGATCACTTGTATGCATGCGTCCCTGCACAAGCAGCTGTCTTCGTGC...

XM_057945513.1
CATTTCAAACAGCACGAATTATTTTACGGGTCCAAAAGGCGCTTCACTTTCGTTTTTTGAACTCGAAAAGAAATATTTTGGTGATCAAAATCAGGAAAATTTCCCTCGGATTGCACGAAATTCGAGATTCGCGCTCTAATTTCTCTGTACCAGCGCATACAGATCACTTGTATGCATGCGTCCCTGCACAAGCAGCTGTCTTCGTGCTCTCTGTCGCCCGCTTCGATCTTAGCTGAGAGTGAGGACTCTGAGGTTCAATT...

CDS

2 records

下载 CDS FASTA

LOC131016785
ATGTTTTACTCACAGTTCATATTAGCGAAAAAGGGGCCGCTGGGAACGATTTGGATAGCTGCGCACTTGGAGCGTAAGCTTCGTAAGAATCAGGTTGCTGATACTGATATTGGAGTTTCTGTGGATTCAATTCTTTTCCCCGACGTGCCGATTGCACTTCGTTTGTCCAGCCATCTCCTGCTTGGTGTGGTGAGGATCTACAATAAAAAGGTGAACTACCTCTTTGATGATTGCAGTGAGGCTTTGCTCAAAGTCAAGCA...

Protein

2 records

下载 Protein FASTA

XP_057801495.1
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYNKKVNYLFDDCSEALLKVKQAFRSTAVDLPPEESKAPYHSITLPEKFDLDDFELPDSDIFQGNYVDHHISSREQITLQDTMEGVSYSTSKFGLDERFGDGDMSGLDLEEELFREKLGTEEHADEGADPQTSFGSTSTLKQDQHPEDLGTNSEAMVDGDDECADIMDYAQAPCTPGLEDEPNFSKVQASACDDH...

XP_057801496.1
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYNKKVNYLFDDCSEALLKVKQAFRSTAVDLPPEESKAPYHSITLPEKFDLDDFELPDSDIFQGNYVDHHISSREQITLQDTMEGVSYSTSKFGLDERFGDGDMSGLDLEEELFREKLGTEEHADEGADPQTSFGSTSTLKQDQHPEDLGTNSEAMVDGDDECADIMDYAQAPCTPGLEDEPNFSKVQASACDDH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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