Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G000205`

Chromosome: Chr03 Coordinates: 2361884-2363159 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G000205`
Name	SmilChr03G000205
Description	disease susceptibility protein LOV1-like
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	2361884 - 2363159 / `+`

ID Mapping

NCBI Gene ID	`LOC131016952`
GeneID	`131016952`
locus_tag	`-`
NCBI Name	`LOC131016952`
Original query	`SmilChr03G000205`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	disease susceptibility protein LOV1-like
Product	disease susceptibility protein LOV1-like
Arabidopsis	`AT3G50950` (ZAR1) HOPZ-ACTIVATED RESISTANCE 1 [Source:NCBI gene (formerly Entrezgene);Acc:824259] identity=27.8; qcov=1; evalue=3.5e-12; confidence=low
Rice	`Os11g0686500` - identity=40; qcov=0.521; evalue=1.18e-14; confidence=low
GO	GO:0043531 (ADP binding)
KEGG	-
Pfam	PF00931 (NB-ARC)
InterPro	-
eggNOG	-
NR	GeneID:131016952

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801773.1`
2	Nucleus	细胞核	0.00000	`XP_057801773.1`
3	Chromosome	染色体	0.00000	`XP_057801773.1`
4	Centromere	着丝粒	0.00000	`XP_057801773.1`
5	Chromatin	染色质	0.00000	`XP_057801773.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:2362034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C12,C30,C71
`Chr3:2362039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,B57,B85,C46
`Chr3:2362048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr3:2362051`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B108,C23
`Chr3:2362051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:2362052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B11,B20,C33
`Chr3:2362085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B29,B92,C13
`Chr3:2362099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,C85,D11,D8
`Chr3:2362100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B113,B55,C7,D3
`Chr3:2362104`	`TA`	`T`	1bp_deletion	frameshift_variant	7	A15,B39,B56,B80,B91,C56,D6
`Chr3:2362111`	`C`	`T`	EMS_canonical_SNV	stop_gained	15	A13,A8,B108,B131,B30,B31,B48,B61,B72,C23,C26,C36,C42,C62,D6
`Chr3:2362114`	`C`	`T`	EMS_canonical_SNV	stop_gained	18	A13,A8,B135,B2,B36,B7,B83,B88,C12,C22,C37,C39,C59,C63,C64,C66,C74,C85

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057801773.1

211 aa

106

211

NB-ARC

PF00931 NB-ARC 158-210 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057801773.1`	Pfam	`PF00931`	NB-ARC	Domain	158	210	2.1e-12	47.7	NB-ARC domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057945790.1
TATATAACTTATGTATTGCAAACTGGGGCTATAAAACTTATGTTATTTTAAAATAGGGTCTTTCAGCCATTCTTCCAGCTCAGTTTATCTTTATCTGCAAAAATCTAGTAGCAAAAACTTAACTGTGATCACCAAAGATGGCTTATGCTGCTCTTCTTTCCCTCGCCCGAACCACTGCAGAAATAATCTTGGATCAAGATAGATATTCCATTTCTCGTAATAAAAAACAACAAATTCGATCTATCTATGAACCATTTATT...

CDS

1 records

Download CDS FASTA

LOC131016952
ATGGCTTATGCTGCTCTTCTTTCCCTCGCCCGAACCACTGCAGAAATAATCTTGGATCAAGATAGATATTCCATTTCTCGTAATAAAAAACAACAAATTCGATCTATCTATGAACCATTTATTTTCTTGCAAGAGTTTCTTGAAGATTTTCCCGAAAAAGCCAACATCTTAGATGGGCGAATTAGAGATTTAGCATATGAAGCAGAACATATTATTGAGTCTTTCATATTGGACGAAGCTCCATCACATTGGTGGAACGT...

Protein

1 records

Download Protein FASTA

XP_057801773.1
MAYAALLSLARTTAEIILDQDRYSISRNKKQQIRSIYEPFIFLQEFLEDFPEKANILDGRIRDLAYEAEHIIESFILDEAPSHWWNVLAAKSKLKLLQIRKIRKETDSITREVMIIKNNSAVAVQLGASSSAAAGSPSRSAPIIKIGYMVGLHEDLLAIKSRLCGESPNLEVIPIVGMGGIGKTTLAKCVYDDPLTVQRFDIRVWVTVSQD

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

Download upstream Download downstream Download upstream + gene + downstream

JBrowse

Open genome browser