Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000215`

染色体: Chr03 坐标: 2506189-2515083 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000215`
名称	SmilChr03G000215
描述	putative late blight resistance protein homolog R1B-16
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	2506189 - 2515083 / `+`

ID 对照

NCBI Gene ID	`LOC131016834`
GeneID	`131016834`
locus_tag	`-`
NCBI Name	`LOC131016834`
原始查询	`SmilChr03G000215`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-16
产物	putative late blight resistance protein homolog R1B-16
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=28.6; qcov=1.04; evalue=1.25e-85; confidence=low
Rice	`Os08g0424700` (P0456B03.103) - identity=28.4; qcov=0.988; evalue=3.4e-83; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016834

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801584.1`
2	Nucleus	细胞核	0.00000	`XP_057801584.1`
3	Chromosome	染色体	0.00000	`XP_057801584.1`
4	Centromere	着丝粒	0.00000	`XP_057801584.1`
5	Chromatin	染色质	0.00000	`XP_057801584.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:2507414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B64,C21,C54
`Chr3:2507586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B16,D9
`Chr3:2507603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B83,C39,C67
`Chr3:2507620`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B104
`Chr3:2507620`	`CT`	`C`	1bp_deletion	CDS_variant	1	B104
`Chr3:2507638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:2507668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B16,C15,D9
`Chr3:2507683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B31,C28,C32,C68
`Chr3:2507747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B35,C31,C32,D2
`Chr3:2507762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr3:2507820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C28,C87
`Chr3:2507831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801584.1

849 aa

424

849

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 156-323 aa PF23559 WHD_DRP 403-475 aa PF23598 LRR_14 531-720 aa

XP_057801586.1

849 aa

424

849

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 156-323 aa PF23559 WHD_DRP 403-475 aa PF23598 LRR_14 531-720 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801584.1`	Pfam	`PF00931`	NB-ARC	Domain	156	323	4.5e-44	150.8	NB-ARC domain
`XP_057801584.1`	Pfam	`PF23559`	WHD_DRP	Domain	403	475	3.8e-19	69.2	Disease resistance protein Winged helix domain
`XP_057801584.1`	Pfam	`PF23598`	LRR_14	Repeat	531	720	2.3e-23	83.2	Leucine-rich repeat region
`XP_057801586.1`	Pfam	`PF00931`	NB-ARC	Domain	156	323	4.5e-44	150.8	NB-ARC domain
`XP_057801586.1`	Pfam	`PF23559`	WHD_DRP	Domain	403	475	3.8e-19	69.2	Disease resistance protein Winged helix domain
`XP_057801586.1`	Pfam	`PF23598`	LRR_14	Repeat	531	720	2.3e-23	83.2	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945603.1
ATGAATAATGTATCTCTCTGTCTTCTAAACTAGCCCTGCTCTCTTCGCTCTCTTTCAGCCATTTTTCCAGCTTAGTTTATCTTTATCTGCAAAAATCTAGCAGCAAAAACTTAACTGTGATCACCAAAGATGGCTTATGCTGCTCTTCTTTCCCTTGGCCAAACCACTGAAAACATAATCTTGGATCAAGATAGATATTTCATTTCTCGTAATATAAAACAACAAATCCGATCTATCTATCAACCATTTATTTTCTTGAA...

XM_057945601.1
CTCTTCGCTCTCTTTCAGCCATTTTTCCAGCTTAGTTTATCTTTATCTGCAAAAATCTAGCAGCAAAAACTTAACTGTGATCACCAAAGATGGCTTATGCTGCTCTTCTTTCCCTTGGCCAAACCACTGAAAACATAATCTTGGATCAAGATAGATATTTCATTTCTCGTAATATAAAACAACAAATCCGATCTATCTATCAACCATTTATTTTCTTGAAAGAGTTTCTTGAAGATTTTCCCGAGAAAGCCAACATCTTG...

CDS

2 records

下载 CDS FASTA

LOC131016834
ATGGCTTATGCTGCTCTTCTTTCCCTTGGCCAAACCACTGAAAACATAATCTTGGATCAAGATAGATATTTCATTTCTCGTAATATAAAACAACAAATCCGATCTATCTATCAACCATTTATTTTCTTGAAAGAGTTTCTTGAAGATTTTCCCGAGAAAGCCAACATCTTGGATGGGCAAATCAGAGATTTAGCATATGAAGCAGAGCATATTATTGAGTCTTTCATATTGGTGGAAGCTCCATCACATTGGTGGAATGT...

Protein

2 records

下载 Protein FASTA

XP_057801584.1
MAYAALLSLGQTTENIILDQDRYFISRNIKQQIRSIYQPFIFLKEFLEDFPEKANILDGQIRDLAYEAEHIIESFILVEAPSHWWNVLAAKSKLKWQIRKIRKEAKSITREVMIIKNNSTDAMQLGASSSAAGSLAKPAPIIKIDYMVGLHEDLLAIKSRLCGESPNLQVIPIVGMGGIGKTTLAKCVYDDPLTVQRFDIRVWVTVSQDYNADVVLSALLSSMEEFDKDRSEESNESSGEKVFKILKGRRYLLVMDDIWS...

XP_057801586.1
MAYAALLSLGQTTENIILDQDRYFISRNIKQQIRSIYQPFIFLKEFLEDFPEKANILDGQIRDLAYEAEHIIESFILVEAPSHWWNVLAAKSKLKWQIRKIRKEAKSITREVMIIKNNSTDAMQLGASSSAAGSLAKPAPIIKIDYMVGLHEDLLAIKSRLCGESPNLQVIPIVGMGGIGKTTLAKCVYDDPLTVQRFDIRVWVTVSQDYNADVVLSALLSSMEEFDKDRSEESNESSGEKVFKILKGRRYLLVMDDIWS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器