Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000217`

染色体: Chr03 坐标: 2518593-2525041 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000217`
名称	SmilChr03G000217
描述	putative late blight resistance protein homolog R1A-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	2518593 - 2525041 / `+`

ID 对照

NCBI Gene ID	`LOC131016818`
GeneID	`131016818`
locus_tag	`-`
NCBI Name	`LOC131016818`
原始查询	`SmilChr03G000217`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-3
产物	putative late blight resistance protein homolog R1A-3
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28; qcov=0.916; evalue=8.98e-83; confidence=low
Rice	`Os10g0183000` (OsLSR) - identity=26.9; qcov=0.945; evalue=1.7e-73; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016818

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057801550.1`
2	Nucleus	细胞核	0.00000	`XP_057801550.1`
3	Chromosome	染色体	0.00000	`XP_057801550.1`
4	Centromere	着丝粒	0.00000	`XP_057801550.1`
5	Chromatin	染色质	0.00000	`XP_057801550.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:2520014`	`GA`	`G`	1bp_deletion	frameshift_variant	5	B107,B122,B30,B67,C47
`Chr3:2520020`	`T`	`TTA`	2bp_insertion	frameshift_variant	1	B28
`Chr3:2520020`	`T`	`TTA`	2bp_insertion	CDS_variant	1	B28
`Chr3:2520030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,B50
`Chr3:2520077`	`ATT`	`A`	2bp_deletion	frameshift_variant	3	B75,B78,C82
`Chr3:2520077`	`ATT`	`A`	2bp_deletion	CDS_variant	3	B75,B78,C82
`Chr3:2520083`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B75,B78,C82
`Chr3:2520083`	`CA`	`C`	1bp_deletion	CDS_variant	3	B75,B78,C82
`Chr3:2520096`	`G`	`GA`	1bp_insertion	frameshift_variant	51	A13,A14,A3,A4,B1,B113,B124,B127,B130,B135,B139,B14,B15,B16,B24,B25,B3,B32,B34,B36,B4,B42,B44,B46,B49,B50,B54,B59,B61,B67,B71,B72,B79,B80,B82,B88,B9,B90,B94,C12,C24,C27,C41,C43,C44,C6,C62,C70,C85,D11,D4
`Chr3:2520139`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A19
`Chr3:2520139`	`TC`	`T`	1bp_deletion	CDS_variant	1	A19
`Chr3:2520243`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801550.1

886 aa

443

886

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 159-323 aa PF23559 WHD_DRP 408-478 aa PF23598 LRR_14 530-790 aa

XP_057801552.1

886 aa

443

886

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 159-323 aa PF23559 WHD_DRP 408-478 aa PF23598 LRR_14 530-790 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801550.1`	Pfam	`PF00931`	NB-ARC	Domain	159	323	9.6e-41	139.9	NB-ARC domain
`XP_057801550.1`	Pfam	`PF23559`	WHD_DRP	Domain	408	478	1.3e-22	80.3	Disease resistance protein Winged helix domain
`XP_057801550.1`	Pfam	`PF23598`	LRR_14	Repeat	530	790	1.9e-22	80.3	Leucine-rich repeat region
`XP_057801552.1`	Pfam	`PF00931`	NB-ARC	Domain	159	323	9.6e-41	139.9	NB-ARC domain
`XP_057801552.1`	Pfam	`PF23559`	WHD_DRP	Domain	408	478	1.3e-22	80.3	Disease resistance protein Winged helix domain
`XP_057801552.1`	Pfam	`PF23598`	LRR_14	Repeat	530	790	1.9e-22	80.3	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945569.1
ATTTATTGTTAGTGTCATTTCGAAATAGTGTTATTTATATAACATGATAGTGTCATTTGTAAAACAAAATAGTGTTAGTGTCATTTCAAAATATTGTTAGTGTTAGTATCATTTAGATTTAGTGTTAGTGTTATTTACACCCGAGTCTACGGTACACTCGGGTGTACAGGAGACTACATCGATTTTTTATTGACTACTGAAATTAATAGTACAATATAGTAATTCATTCAATTGCAATATTTAATTTATATAAATTAGTT...

XM_057945567.1
TTTATTGTTAGTGTCATTTCGAAATAGTGTTATTTATATAACATGATAGTGTCATTTGTAAAACAAAATAGTGTTAGTGTCATTTCAAAATATTGTTAGTGTTAGTATCATTTAGATTTAGTGTTAGTGTTATTTACACCCGAGTCTACGGTACACTCGGGTGTACAGGAGACTACATCGATTTTTTATTGACTACTGAAATTAATAGTACAATATAGTAATTCATTCAATTGCAATATTTAATTTATATAAATTAGTTA...

CDS

2 records

下载 CDS FASTA

LOC131016818
ATGGCTTATTCTACTCTTGTTTCACTTGAAAGAACCATTGATCAATTCCTCAATCATAATCAATTTTCCATTTCTCCTCACGAAAAAAAACATGTTATATCTCTCGATAAATATGTTATTACACTCCGAGCTTTTCTTGAGGATTTTCCCGAGAAAGCCAAGAGTTTTGAAGCAAGAATGAGGAATGTAGCAATGGAGGCAGAAGATGTTGTCGAATTGTATATGATGGAAAAAATCCACTACAATATTCGATATACCCA...

Protein

2 records

下载 Protein FASTA

XP_057801550.1
MAYSTLVSLERTIDQFLNHNQFSISPHEKKHVISLDKYVITLRAFLEDFPEKAKSFEARMRNVAMEAEDVVELYMMEKIHYNIRYTHWIAELRRIKFIFQLRRIENQMDSIAGVVVEIKNSIITIKDAELDDSVGTSSSSSQGAEAGKIDMVGLNEDLIEIKAWLCGDSRQLQILPITGMGGIGKTTLARNAYDDPLIMEHFQIRVWVTITQDYSEERILSNIFDSLKEFNRERNDRSMAEKVYKILVGRRFLIVMDDMW...

XP_057801552.1
MAYSTLVSLERTIDQFLNHNQFSISPHEKKHVISLDKYVITLRAFLEDFPEKAKSFEARMRNVAMEAEDVVELYMMEKIHYNIRYTHWIAELRRIKFIFQLRRIENQMDSIAGVVVEIKNSIITIKDAELDDSVGTSSSSSQGAEAGKIDMVGLNEDLIEIKAWLCGDSRQLQILPITGMGGIGKTTLARNAYDDPLIMEHFQIRVWVTITQDYSEERILSNIFDSLKEFNRERNDRSMAEKVYKILVGRRFLIVMDDMW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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