当前解析结果
SmilChr03G000222| 统一新 Gene ID | SmilChr03G000222 |
|---|---|
| 名称 | SmilChr03G000222 |
| 描述 | putative late blight resistance protein homolog R1A-4 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 2596834 - 2607793 / + |
| NCBI Gene ID | LOC131015774 |
|---|---|
| GeneID | 131015774 |
| locus_tag | - |
| NCBI Name | LOC131015774 |
| 原始查询 | SmilChr03G000222 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-4 |
| 产物 | putative late blight resistance protein homolog R1A-4 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=28.3; qcov=0.458; evalue=9.03e-44; confidence=low |
| Rice | Os07g0186500- identity=27.2; qcov=0.474; evalue=6.93e-52; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015774 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.40000 | XP_057800181.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057800181.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057800181.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057800181.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057800181.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:2597025 |
G |
A |
EMS_canonical_SNV | stop_gained | 18 | A14,A22,A25,B111,B136,B14,B15,B52,B73,B91,C27,C3,C45,C5,C55,C75,C78,D6 |
Chr3:2597032 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B65,B96,C60 |
Chr3:2597040 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B85,D1 |
Chr3:2597040 |
G |
GT |
1bp_insertion | CDS_variant | 2 | B85,D1 |
Chr3:2597061 |
AG |
A |
1bp_deletion | frameshift_variant | 21 | A10,A13,A16,A19,B102,B113,B130,B134,B137,B18,B27,B36,B61,B83,C22,C3,C39,C40,C46,C59,C82 |
Chr3:2597134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr3:2597136 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B129 |
Chr3:2597136 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B129 |
Chr3:2597140 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C30 |
Chr3:2597259 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | C10 |
Chr3:2597259 |
T |
TC |
1bp_insertion | CDS_variant | 1 | C10 |
Chr3:2597260 |
A |
ACC |
2bp_insertion | frameshift_variant | 1 | C10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800181.1PF00931
NB-ARC 196-241 aa
PF00931
NB-ARC 318-440 aa
PF23559
WHD_DRP 527-598 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800181.1 |
Pfam | PF00931 |
NB-ARC | Domain | 196 | 241 | 3.3e-35 | 121.9 | NB-ARC domain |
XP_057800181.1 |
Pfam | PF00931 |
NB-ARC | Domain | 318 | 440 | 3.3e-35 | 121.9 | NB-ARC domain |
XP_057800181.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 527 | 598 | 3.5e-15 | 56.5 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。