当前解析结果
SmilChr03G000228| 统一新 Gene ID | SmilChr03G000228 |
|---|---|
| 名称 | SmilChr03G000228 |
| 描述 | GDSL esterase/lipase LIP-4-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 2719788 - 2721228 / - |
| NCBI Gene ID | LOC131016915 |
|---|---|
| GeneID | 131016915 |
| locus_tag | - |
| NCBI Name | LOC131016915 |
| 原始查询 | SmilChr03G000228 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GDSL esterase/lipase LIP-4-like |
| 产物 | GDSL esterase/lipase LIP-4-like |
| Arabidopsis | AT1G56670 (AT1G56670)GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842122] identity=43; qcov=0.997; evalue=8.37e-100; confidence=medium |
| Rice | Os01g0329900 (OsGELP14)- identity=42.3; qcov=0.955; evalue=5.25e-88; confidence=medium |
| GO | GO:0016788 (hydrolase activity, acting on ester bonds) |
| KEGG | - |
| Pfam | PF00657 (Lipase_GDSL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016915 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057801701.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057801701.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801701.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801701.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801701.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:2719827 |
C |
CA |
1bp_insertion | frameshift_variant | 33 | A10,A11,B122,B130,B134,B16,B34,B38,B39,B47,B57,B6,B60,B63,B72,B74,B76,B83,B88,B94,B98,C1,C13,C19,C27,C37,C40,C42,C44,C56,C67,C83,D6 |
Chr3:2719867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr3:2719872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr3:2720124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,B16,B70,C79 |
Chr3:2720175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B49 |
Chr3:2720189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,C87 |
Chr3:2720190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B23 |
Chr3:2720266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr3:2720289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr3:2720292 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr3:2720440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B55,C31 |
Chr3:2720482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B72,C64,C66,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801701.1PF00657
Lipase_GDSL 35-330 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801701.1 |
Pfam | PF00657 |
Lipase_GDSL | Family | 35 | 330 | 7.1e-41 | 141.4 | GDSL-like Lipase/Acylhydrolase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。