Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000242`

染色体: Chr03 坐标: 2865605-2869423 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000242`
名称	SmilChr03G000242
描述	putative late blight resistance protein homolog R1A-3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	2865605 - 2869423 / `+`

ID 对照

NCBI Gene ID	`LOC131016794`
GeneID	`131016794`
locus_tag	`-`
NCBI Name	`LOC131016794`
原始查询	`SmilChr03G000242`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-3
产物	putative late blight resistance protein homolog R1A-3
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=28.9; qcov=0.714; evalue=7.11e-71; confidence=low
Rice	`Os07g0186500` - identity=32.2; qcov=0.612; evalue=2.6e-75; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131016794

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801511.1`
2	Cytosol	细胞质基质	0.20000	`XP_057801511.1`
3	Nucleus	细胞核	0.00000	`XP_057801511.1`
4	Chromosome	染色体	0.00000	`XP_057801511.1`
5	Centromere	着丝粒	0.00000	`XP_057801511.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:2865994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:2866014`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B16,B46,B95
`Chr3:2866100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:2866118`	`GA`	`G`	1bp_deletion	frameshift_variant	8	A16,B136,B24,B26,B40,B8,C42,C60
`Chr3:2866134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B17,C79,C82
`Chr3:2866167`	`G`	`GA`	1bp_insertion	frameshift_variant	4	B26,B40,B8,C60
`Chr3:2866167`	`G`	`GA`	1bp_insertion	CDS_variant	4	B26,B40,B8,C60
`Chr3:2866176`	`T`	`TTC`	2bp_insertion	frameshift_variant	20	B104,B125,B27,B47,B6,B67,B72,B78,C10,C18,C21,C26,C33,C38,C46,C56,C61,C71,C73,D9
`Chr3:2866217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,A3,B124,B135,B79
`Chr3:2866223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr3:2866225`	`C`	`CTG`	2bp_insertion	frameshift_variant	92	A18,A20,A4,A7,B1,B10,B100,B103,B105,B110,B111,B112,B113,B115,B117,B118,B119,B122,B126,B130,B131,B133,B136,B20,B21,B23,B28,B3,B30,B36,B38,B39,B42,B43,B46,B47,B49,B5,B52,B54,B57,B64,B65,B69,B71,B8,B80,B82,B83,B84,B86,B91,B93,B95,C14,C17,C2,C3,C30,C32,C35,C37,C38,C39,C41,C44,C45,C49,C5,C54,C56,C59,C6,C60,C64,C66,C68,C7,C71,C72,C75,C76,C80,C82,C83,C84,C87,D10,D2,D3,D4,D7
`Chr3:2866243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801511.1

1000 aa

500

1000

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 294-461 aa PF23559 WHD_DRP 545-616 aa PF23598 LRR_14 677-943 aa

XP_057801512.1

1000 aa

500

1000

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 294-461 aa PF23559 WHD_DRP 545-616 aa PF23598 LRR_14 677-943 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801511.1`	Pfam	`PF00931`	NB-ARC	Domain	294	461	1.4e-40	139.4	NB-ARC domain
`XP_057801511.1`	Pfam	`PF23559`	WHD_DRP	Domain	545	616	3.7e-21	75.6	Disease resistance protein Winged helix domain
`XP_057801511.1`	Pfam	`PF23598`	LRR_14	Repeat	677	943	2.2e-22	80.0	Leucine-rich repeat region
`XP_057801512.1`	Pfam	`PF00931`	NB-ARC	Domain	294	461	1.4e-40	139.4	NB-ARC domain
`XP_057801512.1`	Pfam	`PF23559`	WHD_DRP	Domain	545	616	3.7e-21	75.6	Disease resistance protein Winged helix domain
`XP_057801512.1`	Pfam	`PF23598`	LRR_14	Repeat	677	943	2.2e-22	80.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945528.1
TCACATAAAGGTAGCAATTTCACTTCTTTGATGGATTTGTTAGCATTCGGCACTACAGTATGTCTTCTGCTTTCATAATTGATGGTGTTCTTGGAAATTTTATAATCTAATCTACTTTCTTCCTTTTTTCTTCTAGATCACATTAGAAAAATGAAAAATCAATCAAGCAAAACCACTTTTTTGGATGCCACAACTTTTCAAAATGATCTGTATTGTCATTTCCACAAAAAATACTCGATGAATACTGATCATCATCAATC...

XM_057945529.1
TCACATAAAGGTAGCAATTTCACTTCTTTGATGGATTTGTTAGCATTCGGCACTACAGTATGTCTTCTGCTTTCATAATTGATGGTGTTCTTGGAAATTTTATAATCTAATCTACTTTCTTCCTTTTTTCTTCTAGATCACATTAGAAAAATGAAAAATCAATCAAGCAAAACCACTTTTTTGGATGCCACAACTTTTCAAAATGATCTGTATTGTCATTTCCACAAAAAATACTCGATGAATACTGATCATCATCAATC...

CDS

2 records

下载 CDS FASTA

LOC131016794
ATGGCCTATGCTGCTCTTGTCTCCCTCACAAACACCATAGACCAATTCCTAAACAGCAATCTACATTCCATCTCTGTTGAAGAAAAACAACAAATTACATCTCTCCTTGAGTATGTTACTCCCTTCCAAGACTTCCTCGACAAATTTCCAGACAAGTTCAAGATTTTGGAAGAGCGAATGAGGAAAGTGGCAAATGAAGCAGAAGATATCTTAGAATATCTTGTGCTGGAAAAGGTTTTCTTGTCTTCTGATGAAGAGCC...

Protein

2 records

下载 Protein FASTA

XP_057801511.1
MAYAALVSLTNTIDQFLNSNLHSISVEEKQQITSLLEYVTPFQDFLDKFPDKFKILEERMRKVANEAEDILEYLVLEKVFLSSDEEPESHKLDWGTVIKDTSLKYKKMLKECGQDFLGDEATDNNSLKGRIRNIVIEGQKINSFLKWERNHIRFRDKWRFLPAEFAMFKSRLHFINHLKKMGSEIDSIMAEATAVKNNKSDKAASSSGLAPPDRVSDDEKQEEEETEYYRSSKHELQMERVMGEIALIAAQVKEIKDSSS...

XP_057801512.1
MAYAALVSLTNTIDQFLNSNLHSISVEEKQQITSLLEYVTPFQDFLDKFPDKFKILEERMRKVANEAEDILEYLVLEKVFLSSDEEPESHKLDWGTVIKDTSLKYKKMLKECGQDFLGDEATDNNSLKGRIRNIVIEGQKINSFLKWERNHIRFRDKWRFLPAEFAMFKSRLHFINHLKKMGSEIDSIMAEATAVKNNKSDKAASSSGLAPPDRVSDDEKQEEEETEYYRSSKHELQMERVMGEIALIAAQVKEIKDSSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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