当前解析结果
SmilChr03G000244| 统一新 Gene ID | SmilChr03G000244 |
|---|---|
| 名称 | SmilChr03G000244 |
| 描述 | putative late blight resistance protein homolog R1B-23 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 2901348 - 2904383 / - |
| NCBI Gene ID | LOC131016800 |
|---|---|
| GeneID | 131016800 |
| locus_tag | - |
| NCBI Name | LOC131016800 |
| 原始查询 | SmilChr03G000244 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-23 |
| 产物 | putative late blight resistance protein homolog R1B-23 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=26.1; qcov=0.984; evalue=1.19e-65; confidence=low |
| Rice | Os07g0186500- identity=30.7; qcov=0.73; evalue=6.02e-80; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016800 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057801525.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057801525.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057801525.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057801525.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057801525.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:2901458 |
TTC |
T |
2bp_deletion | frameshift_variant | 10 | A13,B3,B47,B66,C3,C47,C53,C56,C86,C87 |
Chr3:2901461 |
A |
ATG |
2bp_insertion | frameshift_variant | 6 | B3,B47,C47,C53,C56,C86 |
Chr3:2901463 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | C50 |
Chr3:2901463 |
C |
CG |
1bp_insertion | CDS_variant | 1 | C50 |
Chr3:2901485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B29,B56,C45 |
Chr3:2901487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B56,B62,B75,B98 |
Chr3:2901511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C50,D2 |
Chr3:2901516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C36,C81 |
Chr3:2901546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D6,D7 |
Chr3:2901599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr3:2901612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B13,B75,B99 |
Chr3:2901615 |
ACG |
A |
2bp_deletion | frameshift_variant | 5 | B47,C47,C53,C56,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801525.1PF00931
NB-ARC 239-400 aa
PF23559
WHD_DRP 486-556 aa
PF23598
LRR_14 609-801 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801525.1 |
Pfam | PF00931 |
NB-ARC | Domain | 239 | 400 | 2e-38 | 132.4 | NB-ARC domain |
XP_057801525.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 486 | 556 | 2.6e-17 | 63.3 | Disease resistance protein Winged helix domain |
XP_057801525.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 609 | 801 | 2e-19 | 70.3 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。