当前解析结果
SmilChr03G000246| 统一新 Gene ID | SmilChr03G000246 |
|---|---|
| 名称 | SmilChr03G000246 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 2917171 - 2919438 / - |
| NCBI Gene ID | LOC131015787 |
|---|---|
| GeneID | 131015787 |
| locus_tag | - |
| NCBI Name | LOC131015787 |
| 原始查询 | SmilChr03G000246 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=32.7; qcov=0.466; evalue=3.4e-56; confidence=low |
| Rice | Os11g0633500- identity=35.1; qcov=0.475; evalue=8.26e-69; confidence=medium |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015787 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057800193.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057800193.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057800193.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057800193.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057800193.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:2917205 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B32,B64,B91 |
Chr3:2917210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,A21,A8 |
Chr3:2917211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B26,B74,C39 |
Chr3:2917214 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B128 |
Chr3:2917214 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B128 |
Chr3:2917230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B21,B87,C80 |
Chr3:2917245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B64,C49,C54,C8,C80 |
Chr3:2917260 |
ACC |
A |
2bp_deletion | frameshift_variant | 5 | B64,C49,C54,C8,C80 |
Chr3:2917260 |
ACC |
A |
2bp_deletion | CDS_variant | 5 | B64,C49,C54,C8,C80 |
Chr3:2917263 |
A |
ATT |
2bp_insertion | frameshift_variant | 5 | B64,C49,C54,C8,C80 |
Chr3:2917263 |
A |
ATT |
2bp_insertion | CDS_variant | 5 | B64,C49,C54,C8,C80 |
Chr3:2917292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800193.1PF00931
NB-ARC 180-343 aa
PF23559
WHD_DRP 430-501 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800193.1 |
Pfam | PF00931 |
NB-ARC | Domain | 180 | 343 | 3.9e-40 | 138.0 | NB-ARC domain |
XP_057800193.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 501 | 6.7e-15 | 55.6 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。